Merge branch 'main' into dependabot/npm_and_yarn/astro-5.1.0

.github/actions/validTagsList.json

@@ -56,14 +56,14 @@
     "Calcium imaging",
     "Confocal light microscopy (LM)",
     "Connectomics", 
-    "Containerization",
     "Correlative light EM (CLEM)",
     "Data service",
     "Electron microscopy (EM)",
     "Electrophysiology",
     "Expansion microscopy (ExM)",
     "Fluorescence microscopy",
     "Image registration",
+    "Infrastructure",
     "Lightsheet fluorescence microscopy (LFSM)",
     "Modelling",
     "Neural recording",

src/content/projects/entrypoints.md

@@ -1,7 +1,7 @@
 ---
 title: Entrypoints
 tagline: Support multiple entrypoint scripts in a container for use in containerized scientific tools.
-maintainer: Rokicki
+maintainer: Konrad Rokicki
 preferred contact method: https://github.com/JaneliaSciComp/entrypoints/issues
 project type: [Other]
 github link: https://github.com/JaneliaSciComp/entrypoints
@@ -12,5 +12,7 @@ how to cite text: Cite the software on GitHub
 development team: [Scientific Computing Software]
 programming language: [Go]
 open source license: [BSD-3 Clause]
-use case: [Containerization]
+software type: [Command line application]
+use case: [Infrastructure]
+usage environment: [Local installation]
 ---

src/content/projects/hortacloud.md

@@ -1,7 +1,7 @@
 ---
 title: HortaCloud
 tagline: Large volume volumetric rendering and collaborative neuron annotation in the cloud
-maintainer: Rokicki et al.
+maintainer: David Schauder
 preferred contact method: https://github.com/JaneliaSciComp/hortacloud/issues
 project type: [OSSI - current]
 OSSI project status: [Maintenance]

src/content/projects/maru.md

@@ -1,7 +1,7 @@
 ---
 title: Maru
 tagline: Maru is an opinionated command-line interface for quickly and easily containerizing scientific applications.
-maintainer: Rokicki
+maintainer: Konrad Rokicki
 preferred contact method: https://github.com/JaneliaSciComp/maru/issues
 project type: [Other]
 github link: https://github.com/JaneliaSciComp/maru
@@ -12,5 +12,7 @@ how to cite text: Cite the software on GitHub
 development team: [Scientific Computing Software]
 programming language: [Go]
 open source license: [BSD-3 Clause]
-use case: [Containerization]
+software type: [Command line application]
+use case: [Infrastructure]
+usage environment: [Local installation]
 ---

src/content/projects/neuronbridge.md

@@ -1,7 +1,7 @@
 ---
 title: NeuronBridge
 tagline: A web application for easily and rapidly finding putative morphological matches between large data sets of neurons imaged using different modalities, namely electron microscopy (EM) and light microscopy (LM). Matches have been precomputed for all of Janelia's public EM/LM data sets, and are quick to look up by identifier. You can also upload your own data and match it against these public data sets.
-maintainer: NeuronBridge Team
+maintainer: Konrad Rokicki
 preferred contact method: mailto:neuronbridge@janelia.hhmi.org
 project type: [Other]
 github link: https://github.com/JaneliaSciComp/neuronbridge

src/content/projects/vvd-viewer.md

@@ -31,5 +31,5 @@ use case:
     Annotation,
   ]
 usage environment: [Local installation]
-supported file types: [N5, SWC, TIFF, Zeiss CZI]
+supported file types: [N5, ZARR, OME-Zarr, SWC, TIFF, Zeiss CZI]
 ---

src/content/projects/x2s3.md

@@ -0,0 +1,18 @@
+---
+title: x2s3
+tagline: x2s3 is a service which can be used to provide an S3-compatible interface to any storage system. It powers s3.janelia.org.
+maintainer: Konrad Rokicki
+preferred contact method: https://github.com/JaneliaSciComp/x2s3/issues
+project type: [Other]
+github link: https://github.com/JaneliaSciComp/x2s3
+documentation link: https://github.com/JaneliaSciComp/x2s3
+installation instructions link: https://github.com/JaneliaSciComp/x2s3?tab=readme-ov-file#running
+how to cite link: https://github.com/JaneliaSciComp/x2s3
+how to cite text: Cite the software on GitHub
+development team: [Scientific Computing Software]
+programming language: [Python]
+open source license: [BSD-3 Clause]
+software type: [Framework, Service]
+use case: [Infrastructure]
+usage environment: [Cloud, Web browser]
+---

src/content/projects/zarrcade.md

@@ -0,0 +1,20 @@
+---
+title: Zarrcade
+tagline: Zarrcade creates searchable web-based galleries of OME-Zarr images.
+maintainer: Konrad Rokicki
+preferred contact method: https://github.com/JaneliaSciComp/zarrcade/issues
+project type: [Other]
+github link: https://github.com/JaneliaSciComp/zarrcade
+documentation link: https://github.com/JaneliaSciComp/zarrcade
+installation instructions link: https://github.com/JaneliaSciComp/zarrcade?tab=readme-ov-file#getting-started
+how to cite link: https://github.com/JaneliaSciComp/zarrcade
+how to cite text: Cite the software on GitHub
+image file: zarrcade.jpg
+image caption: A screenshot of Zarrcade running in a web browser
+development team: [Scientific Computing Software]
+programming language: [Python]
+open source license: [BSD-3 Clause]
+software type: [Web application, Website]
+use case: [Infrastructure, Confocal light microscopy (LM), Electron microscopy (EM)]
+usage environment: [Web browser]
+---