v3.2.5

# Bug fixes
1. Centered cluster average waveforms are properly saved.
  `trWav_spk_clu` for filtered waveforms and `trWav_raw_clu` for raw waveforms
  `tmrWav_spk_clu` and `tmrWav_raw_clu` have worked properly, which saves waveforms at all sites.

2. Selecting 'vpp' (peak-to-peak voltage) calcultes different values depending on whether you are displaying filtered or raw waveforms.
* When 'pca' or 'ppca' (private pca) features are selected, PCA values are computed for the filtered waveforms whether or not the raw waveforms are displayed.

3. Manual GUI: The x-axis labels on the waveform view are displayed properly without overlapping for smaller monitor size.
* To prevent overlapping displays, the text size is decreased and text angle is rotated (new feature since Matlab 2016b).

# New features
1. Manual GUI: 'ppca' (private PCA) option is added under "Projection" menu.
* When one unit is selected, filtered spike waveforms are projected to the first and second principal vectors of the selected unit for each site.
* When two units are selected, filtered spike waveforms are projected to the first principal axes of the two selected units for each site.

2. "jrc export-chan myparam.prm chan-list" exports channel(s) on "chan-list" to the Matlab workspace and to a binary file (_ch#.jrc).
* To export more than one channel, use "," or ":" without space.
* For example, run "jrc export-chan 33,34,35" or "jrc export-chan 33:35" to export channels 33-35.

3. "jrc export-lfp" to export the LFP waveforms (ordered by the site numbers) to the Matlab workspace.
*  "mnLfp" has a nSamples x nSites dimension, and stores the LFP waveforms in the original data type (16-bit integer by default).
*  "mrSiteXY" has a nSites x 2 dimension, and stores x and y coordinate for the sites (in micrometers)
* To extract a column of sites located at x=0, run "mnLfp(:, mrSiteXY(:,1)==0)"

change_log.txt

@@ -2,6 +2,34 @@
 J. James Jun
 
 --------------------------------------------------------------------
+[2019/1/5: v3.2.5]
+Centered cluster average waveforms are properly saved. 
+  `trWav_spk_clu` for filtered waveforms and `trWav_raw_clu` for raw waveforms
+  `tmrWav_spk_clu` and `tmrWav_raw_clu` have worked properly, which saves
+  waveforms at all sites.
+Selecting 'vpp' (peak-to-peak voltage) calcultes different values
+  depending on whether you are displaying filtered or raw waveforms.
+  When 'pca' or 'ppca' (private pca) features are selected, PCA values are computed for the filtered waveforms whether or not the raw waveforms are displayed.
+Manual GUI: The x-axis labels on the waveform view are displayed without overlapping for smaller sized monitors.
+  To avoid overlapping, the text size is decresased and text angle is rotated (new feature since Matlab 2016b).
+
+# New features
+Manual GUI: 'ppca' (private PCA) option is added under "Projection" menu.
+  When one unit is selected, filtered spike waveforms are projected to the first and second principal vectors of the selected unit for each site.
+  When two units are selected, filtered spike waveforms are projected to the first principal axes of the two selected units for each site.
+"jrc export-chan myparam.prm chan-list" exports channel(s) on "chan-list" to the Matlab workspace and to a binary file (_ch#.jrc).
+  To export more than one channel, use "," or ":" without space. 
+  For example, run "jrc export-chan 33,34,35" or "jrc export-chan 33:35" to export channels 33-35.
+"jrc export-lfp" to export the LFP waveforms (ordered by the site numbers) to the Matlab workspace
+  "mnLfp" has a nSamples x nSites dimension, and stores the LFP waveforms in the original data type (16-bit integer by default).
+  "mrSiteXY" has a nSites x 2 dimension, and stores x and y coordinate for the sites (in micrometers)
+  To extract a column of sites located at x=0, run "mnLfp(:, mrSiteXY(:,1)==0)"
+
+[2019/1/4: v3.2.4]
+# Bug fixes
+Manual GUI: projection display is correctly updated.
+  Previously the second unit selection (shown in red) required two right clicks to update.
+
 [2019/1/3: v3.2.3]
 Bugfix: incorrect "gather" function was called for R2017b when Bigdata toolbox is installed.
 Faster and more robust fft_clean operation (run if `fft_thresh` > 0)

default.prm

@@ -16,7 +16,7 @@ fInverse_file = 0;          % Set to 1 to flip the polarity of the signal
 header_offset = 0;          % File header offset (set to 0 for files containing no header info (e.g. WHISPER format)
 
 % #Execution parameters
-version = 'v3.2.3';         % JRCLUST version. Updated on Jan 3, 2018
+version = 'v3.2.5';         % JRCLUST version. Updated on Jan 8, 2018
 fVerbose = 0;               % Verbose flag, set to 0 to suppress displaying extra information 
 fParfor = 1;                % Use Multiple CPU cores (if parallel processing toolbox is installed)
 fGpu = 1;                   % Use GPU if parallel processing toolbox is installed
@@ -50,7 +50,7 @@ fText = 1;                  % Show spike count per unit (*, press 'n' to toggle
 
 % #Pre-processing (run "jrc spikesort" after change)
 tlim_load = [];             % Time range to load in sec (uses all time range if set to empty)
-vcFilter = 'ndiff';         % {'ndiff', 'sgdiff', 'bandpass', 'fir1', 'user', 'none'}
+vcFilter = 'ndiff';         % {'ndiff', 'sgdiff', 'bandpass', 'fir1', 'user', 'fftdiff', 'none'}
 nDiff_filt = 2;			    % Differentiation filter for vcFilter='sgdiff', ignored otherwise. Set to [] to disable. 2n+1 samples used for centered differentiation
 freqLim = [300, 3000];      % Frequency cut-off limit for vcFilter='bandpass', ignored otherwise. 
 filtOrder = 3;              % Bandpass filter order