Skip to content
@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

Popular repositories Loading

  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 80 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 47 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 33 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 26 3

  6. SharkViewer SharkViewer Public

    SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.

    JavaScript 24 11

Repositories

Showing 10 of 270 repositories
  • EM_recon_pipeline Public

    Pipeline scripts and tools for reconstructing Electron Microscopy volumes.

    JaneliaSciComp/EM_recon_pipeline’s past year of commit activity
    Python 3 BSD-3-Clause 3 0 3 Updated Feb 23, 2025
  • neuronbridge-services Public

    AWS Services for NeuronBridge

    JaneliaSciComp/neuronbridge-services’s past year of commit activity
    JavaScript 2 BSD-3-Clause 1 0 18 Updated Feb 22, 2025
  • burst-compute Public

    Burst compute framework for AWS

    JaneliaSciComp/burst-compute’s past year of commit activity
    JavaScript 4 BSD-3-Clause 1 0 0 Updated Feb 22, 2025
  • dis-utilities Public

    Utilities for Data and Information Services

    JaneliaSciComp/dis-utilities’s past year of commit activity
    JavaScript 1 BSD-3-Clause 1 13 1 Updated Feb 21, 2025
  • FunkeAnnotation Public

    Small tool to annotate images

    JaneliaSciComp/FunkeAnnotation’s past year of commit activity
    Java 0 0 0 0 Updated Feb 21, 2025
  • BigStitcher-Spark Public

    Running compute-intense parts of BigStitcher distributed

    JaneliaSciComp/BigStitcher-Spark’s past year of commit activity
    Java 23 BSD-2-Clause 12 15 0 Updated Feb 21, 2025
  • fileglancer Public

    Browse, share, and publish data in the Janelia file system

    JaneliaSciComp/fileglancer’s past year of commit activity
    Python 0 BSD-3-Clause 0 2 1 Updated Feb 21, 2025
  • jacs-tools-docker Public

    Tools for JACS, containerized with Docker

    JaneliaSciComp/jacs-tools-docker’s past year of commit activity
    ImageJ Macro 0 BSD-3-Clause 0 0 0 Updated Feb 20, 2025
  • doi_common Public

    Library of common DOI-related functions for Python

    JaneliaSciComp/doi_common’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Feb 20, 2025
  • containers Public

    Containers for workflow plugins

    JaneliaSciComp/containers’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Feb 20, 2025
View all repositories