maintain function name consistency across .R files while other determ…

…inations are made - getAccNumFromFA()
JRaviLab · Oct 12, 2024 · 5fcd985 · 5fcd985
1 parent a74fb69
commit 5fcd985
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Showing 4 changed files with 7 additions and 18 deletions.
diff --git a/NAMESPACE b/NAMESPACE
@@ -54,7 +54,6 @@ export(generate_all_aln2fa)
 export(generate_msa)
 export(getAccNumFromFA)
 export(getTopAccByLinDomArch)
-export(get_accnums_from_fasta_file)
 export(get_proc_medians)
 export(get_proc_weights)
 export(make_opts2procs)

diff --git a/R/CHANGED-pre-msa-tree.R b/R/CHANGED-pre-msa-tree.R
@@ -645,7 +645,7 @@ writeMSA_AA2FA <- function(alignment, outpath) {
     return(fasta)
 }
 
-#' Get accnums from fasta file
+#' getAccNumFromFA
 #'
 #' @param fasta_file
 #'
@@ -655,7 +655,7 @@ writeMSA_AA2FA <- function(alignment, outpath) {
 #' @export
 #'
 #' @examples
-get_accnums_from_fasta_file <- function(fasta_file) {
+getAccNumFromFA <- function(fasta_file) {
     txt <- read_file(fasta_file)
     accnums <- stringi::stri_extract_all_regex(fasta_file, "(?<=>)[\\w,.]+")[[1]]
     return(accnums)

diff --git a/man/getAccNumFromFA.Rd b/man/getAccNumFromFA.Rd
diff --git a/man/get_accnums_from_fasta_file.Rd b/man/get_accnums_from_fasta_file.Rd