dvc.lock

schema: '2.0'
stages:
  preprocess:
    cmd: python bin/eda.py grn.input_dir=in_silico
    deps:
    - path: bin/eda.py
      hash: md5
      md5: 151f45518a0f8fc50c9497d3913b9f1a
      size: 2299
    - path: conf/config.yaml
      hash: md5
      md5: 59b721d9d2336c766aae7e5e0ea44787
      size: 152
    - path: conf/experiment_tracking/docker.yaml
      hash: md5
      md5: f9a686d34db5162fc959ca7470695aad
      size: 47
    - path: conf/grn/in_silico.yaml
      hash: md5
      md5: 53861163fdc851b7a76f234bbe196701
      size: 117
    - path: data/preprocessed/in_silico/gold_standard.csv
      hash: md5
      md5: 280e46f849dffad692ec41922b1304e3
      size: 48325
    outs:
    - path: data/out/in_silico/eda/graph.png
      hash: md5
      md5: a117d12ebcf5dc16615c0934041cd7da
      size: 48365
      isexec: true
  eda:
    cmd: python bin/eda.py grn.input_dir=in_silico grn.edge_list=gold_standard.csv
    deps:
    - path: bin/eda.py
      hash: md5
      md5: cc666f68387d125f4b2786d6f8d4bf44
      size: 5415
    - path: conf/config.yaml
      hash: md5
      md5: 2cb8feb6f3f83e224f6518e5193b614b
      size: 268
    - path: conf/experiment_tracking/docker.yaml
      hash: md5
      md5: f9a686d34db5162fc959ca7470695aad
      size: 47
    - path: conf/grn/in_silico.yaml
      hash: md5
      md5: 53861163fdc851b7a76f234bbe196701
      size: 117
    - path: data/preprocessed/in_silico/gold_standard.csv
      hash: md5
      md5: 280e46f849dffad692ec41922b1304e3
      size: 48325
    outs:
    - path: data/out/in_silico/eda/graph.png
      hash: md5
      md5: 8216cd9e2e115dd135b5f8460403ea2e
      size: 104636
      isexec: true
    - path: data/out/in_silico/eda/metrics.csv
      hash: md5
      md5: 7d25de86a25ef4754267823695f8b3aa
      size: 193
      isexec: true
  process:
    cmd: python bin/process.py grn.input_dir=in_silico grn.feature_matrix=expression_data.csv
      grn.edge_list=gold_standard.csv
    deps:
    - path: bin/process.py
      hash: md5
      md5: 57fc391cdee0758840461ccf1468aa15
      size: 4584
    - path: conf/config.yaml
      hash: md5
      md5: 2cb8feb6f3f83e224f6518e5193b614b
      size: 268
    - path: conf/experiment_tracking/docker.yaml
      hash: md5
      md5: f9a686d34db5162fc959ca7470695aad
      size: 47
    - path: conf/grn/in_silico.yaml
      hash: md5
      md5: 53861163fdc851b7a76f234bbe196701
      size: 117
    - path: data/preprocessed/in_silico/expression_data.csv
      hash: md5
      md5: bc5772dc41a43050fb822f065a5c4d2a
      size: 13063512
    - path: data/preprocessed/in_silico/gold_standard.csv
      hash: md5
      md5: 280e46f849dffad692ec41922b1304e3
      size: 48325
    outs:
    - path: data/out/in_silico/processed/expression_data.csv
      hash: md5
      md5: 70b70518c6dbd8489451b8fc88c5e000
      size: 12415950
      isexec: true
    - path: data/out/in_silico/processed/gold_standard.csv
      hash: md5
      md5: 8988a2f805eaa860e550ea6613eef862
      size: 40110
      isexec: true