From 35988621d548dd66fba55fe9348f5a2cc4bf714f Mon Sep 17 00:00:00 2001
From: James Bristow <jbris@users.noreply.github.com>
Date: Wed, 1 Jan 2025 00:07:57 +1300
Subject: [PATCH] Adding Docker build

---
 .env                                |  1 +
 .github/workflows/docker-build.yaml | 38 +++++++++++++++++++++++++++++
 .gitignore                          |  1 -
 Dockerfile.v2.7.3                   | 20 +++++++++++++++
 docker-compose.yaml                 | 11 +++++++++
 5 files changed, 70 insertions(+), 1 deletion(-)
 create mode 100644 .env
 create mode 100644 .github/workflows/docker-build.yaml
 create mode 100644 Dockerfile.v2.7.3
 create mode 100644 docker-compose.yaml

diff --git a/.env b/.env
new file mode 100644
index 0000000..a9c7ff4
--- /dev/null
+++ b/.env
@@ -0,0 +1 @@
+APP_VERSION=v2.7.3
\ No newline at end of file
diff --git a/.github/workflows/docker-build.yaml b/.github/workflows/docker-build.yaml
new file mode 100644
index 0000000..6ed2f7d
--- /dev/null
+++ b/.github/workflows/docker-build.yaml
@@ -0,0 +1,38 @@
+name: Docker Build
+
+on: 
+  workflow_dispatch: {}
+  release:
+    types:
+      - published 
+      
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+permissions:
+  actions: write
+  packages: write
+  
+jobs:
+  build-docker:
+    runs-on: ubuntu-latest
+
+    steps:
+    - name: Docker logout
+      run: docker logout
+    - uses: actions/checkout@v3
+    - name: Set up QEMU
+      uses: docker/setup-qemu-action@v3
+    - name: Set up Docker Buildx
+      uses: docker/setup-buildx-action@v3
+    - name: Docker build
+      run: docker compose build beast2
+    - name: Login to GitHub Package Registry
+      uses: docker/login-action@v2
+      with:
+          registry: ghcr.io
+          username: ${{ github.repository_owner }}
+          password: ${{ secrets.GHCR_TOKEN }}
+    - name: Docker push
+      run: docker compose push beast2
diff --git a/.gitignore b/.gitignore
index 15201ac..921eeba 100644
--- a/.gitignore
+++ b/.gitignore
@@ -128,7 +128,6 @@ celerybeat.pid
 *.sage.py
 
 # Environments
-.env
 .venv
 env/
 venv/
diff --git a/Dockerfile.v2.7.3 b/Dockerfile.v2.7.3
new file mode 100644
index 0000000..6372de4
--- /dev/null
+++ b/Dockerfile.v2.7.3
@@ -0,0 +1,20 @@
+FROM openjdk:8
+
+ARG APP_VERSION
+
+ARG DEBIAN_FRONTEND=noninteractive
+
+ENV USER root
+
+ENV PATH=/root/beast/bin:$PATH
+
+WORKDIR /root/
+
+RUN apt-get update \
+    && apt-get install -y --no-install-recommends curl git cmake build-essential autoconf automake libtool pkg-config \
+    && curl -fsSLO https://github.com/CompEvol/beast2/releases/download/${APP_VERSION}/BEAST.${APP_VERSION}.Linux.x86.tgz \
+    && tar fxz BEAST.${APP_VERSION}.Linux.x86.tgz \
+    && git clone --depth=1 https://github.com/beagle-dev/beagle-lib.git \
+    && apt-get clean \
+    && rm -rf /var/lib/apt/lists/* \
+    && rm -rf /tmp/downloaded_packages
diff --git a/docker-compose.yaml b/docker-compose.yaml
new file mode 100644
index 0000000..5a0b60a
--- /dev/null
+++ b/docker-compose.yaml
@@ -0,0 +1,11 @@
+version: "3.9"
+
+services:
+
+  beast2:
+    image: ghcr.io/jbris/beast2:${APP_VERSION}
+    build:
+      context: .
+      dockerfile: Dockerfile.${APP_VERSION}
+      args:
+        APP_VERSION: $APP_VERSION