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base repository: JAlvarezJarreta/mevolib-workflow
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base: 1.0
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head repository: JAlvarezJarreta/mevolib-workflow
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  • 6 commits
  • 7 files changed
  • 4 contributors

Commits on Mar 4, 2024

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Commits on Mar 7, 2024

  1. Merge pull request #4 from JAlvarezJarreta/jalvarez/minor_updates

    Couple of minor additional features
    JAlvarezJarreta authored Mar 7, 2024
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Commits on May 18, 2024

  1. Workflow profiling updated

    Some changes have been made:
    
    - Now, the workflow's processes adapt to a series of resources predictions based on the workflow input parameters, based on a study case. Thanks to that, the computational resources (CPU, memory and process time) can be assigned more efficiently.
    
    - In case a process fails due to mispredictions, it will be retried. Each time, a bit more resources will be assigned, so that if it is a lack of resources fault, that way it will be solved.
    
    - As a general rule, a process now can fail up to 3 times in total, so that after the second retry it will be ignored (preventing the whole workflow to be stopped in most cases).
    
    - In future work terms, an additional stage to get maximum sequences number before Fetch stage should be added, so that Fetch's profiling is a bit more detailed (even though factors such as Internet connection or sequences features cannot be prevented).
    SMoragon committed May 18, 2024
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Commits on May 26, 2024

  1. Apply suggestions from code review

    Co-authored-by: J. Alvarez-Jarreta <j.alvarez.jarreta@gmail.com>
    SMoragon and JAlvarezJarreta authored May 26, 2024
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  2. Merge pull request #5 from JAlvarezJarreta/profiling

    Workflow profiling updated
    JAlvarezJarreta authored May 26, 2024
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