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Coverage Report

File	Stmts	Miss	Cover	Missing
__init__.py	1	0	100%
_utils.py	10	4	60%	35–36, 38, 43
align
_ClustalOmega.py	3	3	0%	17, 19, 21
_Mafft.py	4	4	0%	17, 20–22
_Muscle.py	3	3	0%	17, 19, 21
__init__.py	51	51	0%	17–22, 24, 26–27, 29, 31, 33, 40, 42, 45, 55–61, 64, 102–108, 111–113, 115, 118–121, 123–124, 127, 129, 131–132, 135–136, 138–139, 141–142, 144
cluster
Genes.py	106	106	0%	18–21, 23–26, 28–29, 32, 35, 91, 112–114, 117–118, 121, 128, 130–131, 134, 136, 139, 174–176, 178–179, 182–185, 187–188, 190–192, 194–195, 197–200, 203–207, 209, 212–213, 218–220, 222, 224–231, 234–235, 237, 239–240, 242, 244–247, 256–260, 263–264, 267–272, 275–277, 282–293, 296–298
NaiveCols.py	21	21	0%	18, 20, 23, 40–42, 44–45, 47, 49–50, 54, 58–61, 63, 65–66, 69–70
NaiveRows.py	19	19	0%	18–19, 22, 37, 39–40, 43–44, 46–47, 49–57
PRD.py	62	62	0%	16–20, 22–23, 25, 28, 60–65, 69–71, 75–77, 79–80, 83, 87–92, 98, 135–136, 142–146, 149, 153–158, 171–176, 178–180, 183–190
__init__.py	37	37	0%	17, 19–21, 23, 25, 27, 29, 31, 33, 36, 44, 46, 49, 74–76, 79–81, 83–84, 87–89, 91–93, 98–103, 106, 108–109
data
__init__.py	3	3	0%	16, 19, 25
rCRS.py	5	5	0%	16, 18, 21–23
fetch
BioSeqs.py	212	212	0%	17, 19–27, 29–30, 32–33, 37, 39, 42, 57–58, 60, 63, 72, 74, 77, 152, 160–161, 163–164, 178–179, 181–187, 191–195, 197–198, 215, 218–220, 222–224, 226–227, 240–242, 245–249, 251–255, 260–265, 267–272, 275–280, 283, 286–289, 291, 294, 296–300, 302–304, 306, 309, 311, 314–324, 326, 342–345, 347, 357–359, 361, 380–383, 385, 388–390, 393–397, 401–406, 408–413, 417–418, 420–423, 425–427, 429, 432–436, 439–444, 447, 450–453, 455, 462, 464–468, 470, 472–473, 475, 490–491, 493, 495–506, 508, 524–529, 532, 534, 537–538
PhyTrees.py	76	76	0%	16–20, 22, 25, 88, 98–99, 101–102, 118–119, 121–128, 130–134, 136–137, 157, 160–163, 165, 171, 173, 179–181, 183, 202–204, 206, 215–217, 219, 236–237, 239, 241–252, 254, 270–280
__init__.py	0	0	100%
inference
_FastTree.py	39	1	97%	66
_RAxML.py	48	3	93%	79, 82, 116
__init__.py	59	8	86%	67, 145–146, 154, 157, 165–167
phyloassemble
_Consense.py	32	32	0%	17–19, 21, 23, 26–27, 30, 39–40, 43, 47–48, 51, 60–61, 63, 65–67, 70, 80–85, 87, 90, 97–99
__init__.py	47	47	0%	17–19, 21, 23–24, 27–28, 31, 33, 38, 47–53, 55–58, 61, 102–111, 113, 116–119, 121, 123, 125–127, 129, 137–138, 140
TOTAL	838	697	16%

Tests	Skipped	Failures	Errors	Time
23	0 💤	0 ❌	0 🔥	2.029s ⏱️