Merge pull request #42 from Inist-CNRS/fix-json-protege

fix: expand all properties

public/loaders/json-protege.ini

@@ -9,23 +9,84 @@ plugin = lodex
 [JSONParse]
 separator = *
 
-
 [bufferize]
 path = bufferID
 
-[filter]
-path = @type.0
-if = http://www.w3.org/2002/07/owl#Class
+[env]
+path = bufferID
+value = get('bufferID')
+
+; BEGIN (expand onProperty) {
+[expand]
+path = http://www.w3.org/2002/07/owl#onProperty
+;file = ./json-protege-resolver.ini ; inline statements, it's more verbose but it's self-sufficient
+[expand/exploding]
+[expand/combine]
+path = value.@id
+primer = env('bufferID')
+prepend = buffers
+
+[expand/combine/replace]
+path = id
+value = get('@id')
+path = value
+value = self().omit('bufferID')
+
+[expand/replace]
+path = id
+value = get('id')
+path = value
+value = get('value.@id.value').mapValues((o) => Array.isArray(o) && o.length === 1 ? o.pop() : o)
+
+[expand/aggregate]
+
+[exchange]
+value = self().omit('bufferID')
+; } END.
+
+; BEGIN (expand someValuesFrom) {
+[expand]
+path = http://www.w3.org/2002/07/owl#someValuesFrom
+;file = ./json-protege-resolver.ini ; inline statements, it's more verbose but it's self-sufficient
+[expand/exploding]
+[expand/combine]
+path = value.@id
+primer = env('bufferID')
+prepend = buffers
+
+[expand/combine/replace]
+path = id
+value = get('@id')
+path = value
+value = self().omit('bufferID')
+
+[expand/replace]
+path = id
+value = get('id')
+path = value
+value = get('value.@id.value').mapValues((o) => Array.isArray(o) && o.length === 1 ? o.pop() : o)
+
+[expand/aggregate]
+
+[exchange]
+value = self().omit('bufferID')
+; } END.
+
+; BEGIN (re-bufferize  all nodes, with there enrichments) {
+[bufferize]
+path = bufferID
 
 [env]
 path = bufferID
 value = get('bufferID')
+; } END.
 
+; BEGIN (expand subClassOf) {
 [expand]
 path = http://www.w3.org/2000/01/rdf-schema#subClassOf
+;file = ./json-protege-resolver.ini ; inline statements, it's more verbose but it's self-sufficient
 
 [expand/exploding]
-
 [expand/combine]
 path = value.@id
 primer = env('bufferID')
@@ -37,35 +98,81 @@ value = get('@id')
 path = value
 value = self().omit('bufferID')
 
-; [expand/combine/OBJFlatten]
-; safe = false
-[expand/combine/exchange]
-value = self()
-[expand/combine/assign]
+[expand/replace]
+path = id
+value = get('id')
 path = value
-value = get('value').mapValues((o) => Array.isArray(o) && o.length === 1 ? o[0] : o)
-
+value = get('value.@id.value').mapValues((o) => Array.isArray(o) && o.length === 1 ? o.pop() : o)
 
 [expand/aggregate]
 
 [exchange]
-value = self().mapValues((o) => Array.isArray(o) && o.length === 1 ? o[0] : o)
+value = self().omit('bufferID')
+; } END.
+
 
+; BEGIN (Use prefix) {
+[OBJFlatten]
+safe = false
+
+[OBJNamespaces]
+prefix = dc:
+namespace = http://purl.org/dc/terms/
+
+prefix = dc:
+namespace = http://purl.org/dc/elements/1.1/
+
+prefix = place:
+namespace = http://purl.org/ontology/places#
+
+prefix = rdfs:
+namespace = http://www.w3.org/2000/01/rdf-schema#
+
+prefix = obo:
+namespace = http://purl.obolibrary.org/obo/
+
+prefix = swo:
+namespace = http://www.ebi.ac.uk/swo/
+
+prefix = swo:
+namespace = http://www.ebi.ac.uk/efo/swo/
+
+prefix = owl
+namespace = http://www.w3.org/2002/07/owl#
+
+prefix = inist:
+namespace = http://www.inist.fr/Ontology#
+
+prefix = skos:
+namespace = http://www.w3.org/2004/02/skos/core#
+
+prefix = ontoTM:
+namespace = http://data.loterre.fr/ontoTM#
+
+reference = (@id|@type)$
 
 [OBJFlatten]
+reverse = true
+safe = false
+
+; } END.
+
+; BEGIN (Simplify arrays, fields hierachy) {
+[assign]
+path = rdfs:subClassOf
+value = get('rdfs:subClassOf').reduce((obj, item) => ((obj[item['@id']] = item), obj), {})
 
 [exchange]
-value = self().omit('bufferID') \
-        .mapKeys((value, key) => key \
-            .replace(/(http:[^#]+#)|\/@id\/value|@|(http:\/\/[^\/]+\/)/g, '') \
-		    .replace(/(id\/id)/g,'id')) \
-        .mapValues((value, key) => (key.search(/(id|type)$/) === -1 || !value || typeof value !== 'string' \
-			 ? value \
-			 : value \
-				 .replace(/(http:[^#]+#)|\/@id\/value|@|(http:\/\/[^\/]+\/)/g, '') \
-				 .replace(/(id\/id)/g,'id')))
+value = self().omit('bufferID').mapValues((o) => Array.isArray(o) && o.length === 1 ? o.pop() : o)
+
+[OBJFlatten]
+; } END.
 
 
+[remove]
+reverse = true
+test = get('rdfs:subClassOf/obo:IAO_0000594/@id').includes('obo:IAO_0000594')
 
 
 [objects2columns]
+