This repository contains a curated collection of tools to process single-cell data. The following IGVF pipelines wraps the tools in the modules folder using WDL or Nextflow to create a complete processing pipeline.
single-cell-pipeline: IGVF single-cell pipeline to pre-process and QC single-cell data.crispr-pipeline: IGVF single-cell pipeline to pre-process and QC CRISPR single-cell data.