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@IGVF

Impact of Genomic Variation on Function (IGVF)

The IGVF Consortium aims to understand how genomic variation affects genome function, which in turn impacts phenotype.

IGVF Github Organization

This organization contains repositories for specifications and workflows used by the IGVF consortium.

Participation in this organization is subject to adherance to the IGVF code of conduct.

Popular repositories Loading

  1. atomic-workflows atomic-workflows Public

    Workflows for pre-processing sequencing data from sequence census assays

    Jupyter Notebook 6 2

  2. seqspec seqspec Public

    6 1

  3. datasets datasets Public

    Datasets related to the IGVF workflows

    2 1

  4. single-cell-pipeline single-cell-pipeline Public

    IGVF single-cell pipeline developed by the 'Single-cell Focus Group' to uniformly process single-cell multi-omic datasets.

    WDL 2 1

  5. single-cell-annotation single-cell-annotation Public

    This is the repo for the 5 tiger teams involved in the single-cell annotations

    2

  6. .github .github Public

Repositories

Showing 9 of 9 repositories
  • atomic-workflows Public

    Workflows for pre-processing sequencing data from sequence census assays

    IGVF/atomic-workflows’s past year of commit activity
    Jupyter Notebook 6 2 0 0 Updated Dec 19, 2024
  • single-cell-pipeline Public

    IGVF single-cell pipeline developed by the 'Single-cell Focus Group' to uniformly process single-cell multi-omic datasets.

    IGVF/single-cell-pipeline’s past year of commit activity
    WDL 2 MIT 1 0 1 Updated Dec 12, 2024
  • single-cell-annotation Public

    This is the repo for the 5 tiger teams involved in the single-cell annotations

    IGVF/single-cell-annotation’s past year of commit activity
    2 0 0 0 Updated Oct 1, 2024
  • rigvf Public

    R Interface to the Impact of Genomic Variation on Function ('IGVF') Data Portal

    IGVF/rigvf’s past year of commit activity
    R 0 0 0 0 Updated Sep 26, 2024
  • .github Public
    IGVF/.github’s past year of commit activity
    0 BSD-2-Clause 0 0 0 Updated Sep 22, 2024
  • seqspec Public
    IGVF/seqspec’s past year of commit activity
    6 1 0 0 Updated Sep 9, 2024
  • catalog-back-end-issues Public

    Dummy repo for issue tracking

    IGVF/catalog-back-end-issues’s past year of commit activity
    0 0 0 0 Updated Jun 6, 2024
  • catalog-front-end-issues Public

    Dummy repo for issue tracker

    IGVF/catalog-front-end-issues’s past year of commit activity
    0 0 5 0 Updated Jun 6, 2024
  • datasets Public

    Datasets related to the IGVF workflows

    IGVF/datasets’s past year of commit activity
    2 1 0 0 Updated Oct 10, 2022

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