makefile

CC=g++
CXX=g++
CFLAGS = -Wall -Wconversion -O3 -fPIC -fopenmp
SHVER = 1
OS = $(shell uname)

#LIBS = blas/blas.a
#LIBS = -lblas

all: train predict input 

train: utils.o StripedArray.o FitBit.o HMMProblem.o InputUtil.o trainhmm.cpp
	$(CXX) $(CFLAGS) -o trainhmm trainhmm.cpp utils.o FitBit.o InputUtil.o HMMProblem.o StripedArray.o

predict: utils.o StripedArray.o FitBit.o HMMProblem.o InputUtil.o predicthmm.cpp
	$(CXX) $(CFLAGS) -o predicthmm predicthmm.cpp utils.o FitBit.o InputUtil.o HMMProblem.o StripedArray.o

input: utils.o StripedArray.o InputUtil.o inputconvert.cpp
	$(CXX) $(CFLAGS) -o inputconvert inputconvert.cpp utils.o StripedArray.o InputUtil.o

utils.o: utils.cpp utils.h
	$(CXX) $(CFLAGS) -c -o utils.o utils.cpp

StripedArray.o: StripedArray.cpp StripedArray.h
	$(CXX) $(CFLAGS) -c -o StripedArray.o StripedArray.cpp

InputUtil.o: InputUtil.cpp InputUtil.h
	$(CXX) $(CFLAGS) -c -o InputUtil.o InputUtil.cpp

FitBit.o: FitBit.cpp FitBit.h
	$(CXX) $(CFLAGS) -c -o FitBit.o FitBit.cpp

HMMProblem.o: HMMProblem.cpp HMMProblem.h
	$(CXX) $(CFLAGS) -c -o HMMProblem.o HMMProblem.cpp 

clean:
	rm -f *.o trainhmm predicthmm inputconvert

tidy:
	rm -f *.o