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Merge pull request #1084 from ICB-DCM/develop
release 0.3.1
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38 changes: 19 additions & 19 deletions
38
doc/example/example_nonlinear_monotone/measurementData_example_nonlinear_monotone_linear.tsv
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Original file line number | Diff line number | Diff line change |
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@@ -1,19 +1,19 @@ | ||
observableId preequilibrationConditionId simulationConditionId measurement time observableParameters noiseParameters observableTransformation noiseDistribution measurementType | ||
Activity Inhibitor_0 15.24029495 5 1 lin normal nonlinear_monotone | ||
Activity Inhibitor_3 15.97660789 5 1 lin normal nonlinear_monotone | ||
Activity Inhibitor_10 17.89265379 5 1 lin normal nonlinear_monotone | ||
Activity Inhibitor_25 23.18714697 5 1 lin normal nonlinear_monotone | ||
Activity Inhibitor_35 16.81210375 5 1 lin normal nonlinear_monotone | ||
Activity Inhibitor_50 9.17312936 5 1 lin normal nonlinear_monotone | ||
Activity Inhibitor_75 4.15092812 5 1 lin normal nonlinear_monotone | ||
Activity Inhibitor_100 2.53355252 5 1 lin normal nonlinear_monotone | ||
Activity Inhibitor_300 0.58963290 5 1 lin normal nonlinear_monotone | ||
Ybar Inhibitor_0 0 5 1 lin normal nonlinear_monotone | ||
Ybar Inhibitor_3 0.05999885 5 1 lin normal nonlinear_monotone | ||
Ybar Inhibitor_10 0.19999376 5 1 lin normal nonlinear_monotone | ||
Ybar Inhibitor_25 0.49904277 5 1 lin normal nonlinear_monotone | ||
Ybar Inhibitor_35 0.65916874 5 1 lin normal nonlinear_monotone | ||
Ybar Inhibitor_50 0.81495435 5 1 lin normal nonlinear_monotone | ||
Ybar Inhibitor_75 0.91638297 5 1 lin normal nonlinear_monotone | ||
Ybar Inhibitor_100 0.94898071 5 1 lin normal nonlinear_monotone | ||
Ybar Inhibitor_300 0.98813045 5 1 lin normal nonlinear_monotone | ||
observableId preequilibrationConditionId simulationConditionId measurement time observableParameters noiseParameters observableTransformation noiseDistribution measurementType | ||
Activity Inhibitor_0 15.24029495 5 1 lin normal nonlinear_monotone | ||
Activity Inhibitor_3 15.97660789 5 1 lin normal nonlinear_monotone | ||
Activity Inhibitor_10 17.89265379 5 1 lin normal nonlinear_monotone | ||
Activity Inhibitor_25 23.18714697 5 1 lin normal nonlinear_monotone | ||
Activity Inhibitor_35 16.81210375 5 1 lin normal nonlinear_monotone | ||
Activity Inhibitor_50 9.17312936 5 1 lin normal nonlinear_monotone | ||
Activity Inhibitor_75 4.15092812 5 1 lin normal nonlinear_monotone | ||
Activity Inhibitor_100 2.53355252 5 1 lin normal nonlinear_monotone | ||
Activity Inhibitor_300 0.5896329 5 1 lin normal nonlinear_monotone | ||
Ybar Inhibitor_0 0 5 1 lin normal nonlinear_monotone | ||
Ybar Inhibitor_3 0.05999885 5 1 lin normal nonlinear_monotone | ||
Ybar Inhibitor_10 0.19999376 5 1 lin normal nonlinear_monotone | ||
Ybar Inhibitor_25 0.49904277 5 1 lin normal nonlinear_monotone | ||
Ybar Inhibitor_35 0.65916874 5 1 lin normal nonlinear_monotone | ||
Ybar Inhibitor_50 0.81495435 5 1 lin normal nonlinear_monotone | ||
Ybar Inhibitor_75 0.91638297 5 1 lin normal nonlinear_monotone | ||
Ybar Inhibitor_100 0.94898071 5 1 lin normal nonlinear_monotone | ||
Ybar Inhibitor_300 0.98813045 5 1 lin normal nonlinear_monotone |
6 changes: 3 additions & 3 deletions
6
doc/example/example_nonlinear_monotone/observables_example_nonlinear_monotone.tsv
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,3 +1,3 @@ | ||
observableId observableName observableFormula noiseFormula observableTransformation noiseDistribution | ||
Activity Activity R_R+RIR noiseParameter1_Activity lin normal | ||
Ybar Ybar (RI+RIR+2*RIRI)/Rtot noiseParameter1_Ybar lin normal | ||
observableId observableName observableFormula noiseFormula observableTransformation noiseDistribution | ||
Activity Activity R_R+RIR noiseParameter1_Activity lin normal | ||
Ybar Ybar (RI+RIR+2*RIRI)/Rtot noiseParameter1_Ybar lin normal |
10 changes: 5 additions & 5 deletions
10
doc/example/example_nonlinear_monotone/parameters_example_nonlinear_monotone.tsv
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,5 +1,5 @@ | ||
parameterId parameterName parameterScale lowerBound upperBound nominalValue estimate priorType priorParameters | ||
K1 K1 lin -5 5 0.04 0 | ||
K2 K2 lin -5 5 20 0 | ||
K3 K3 log10 0.1 100000 4000 1 | ||
K5 K5 log10 1.00E-05 100000 0.1 1 | ||
parameterId parameterName parameterScale lowerBound upperBound nominalValue estimate | ||
K1 K1 lin -5 5 0.04 0 | ||
K2 K2 lin -5 5 20 0 | ||
K3 K3 log10 0.1 100000 4000 1 | ||
K5 K5 log10 0.00001 100000 0.1 1 |
7 changes: 7 additions & 0 deletions
7
doc/example/example_nonlinear_monotone/parameters_example_nonlinear_monotone_noise.tsv
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,7 @@ | ||
parameterId parameterName parameterScale lowerBound upperBound nominalValue estimate parameterType | ||
K1 K1 lin -5 5 0.04 0 | ||
K2 K2 lin -5 5 20 0 | ||
K3 K3 log10 0.1 100000 4000 1 | ||
K5 K5 log10 0.00001 100000 0.1 1 | ||
sd_Activity \sigma_{activity} lin 0 inf 1 1 sigma | ||
sd_Ybar \sigma_{ybar} lin 0 inf 1 1 sigma |
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