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Doc: Fix/update/add/prettify some pypesto.profile documentation #2928

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Job	Run time
windows (3.11)	2m 17s
mac (3.11)	18m 49s
julia (3.9)	45m 58s
base (3.9)	11m 12s
julia (3.11)	35m 2s
petab (3.9)	31m 14s
base (3.11)	19m 42s
petab (3.11)	29m 23s
docs (3.11)	5m 55s
hierarchical (3.9)	7m 45s
optimize (3.11)	4m 22s
hierarchical (3.11)	6m 53s
select (3.9)	5m 9s
quality (3.11)	2m 35s
select (3.11)	6m 8s
notebooks1 (3.9)	12m 57s
notebooks2 (3.9)	8m 13s
	4h 13m 34s