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Doc: Fix/update/add/prettify some pypesto.profile documentation #2926

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Job	Run time
windows (3.11)	2m 52s
petab (3.9)	19m 50s
base (3.9)	11m 19s
petab (3.11)	19m 49s
base (3.11)	13m 33s
hierarchical (3.9)	7m 22s
julia (3.9)	19m 49s
hierarchical (3.11)	7m 42s
mac (3.11)	19m 51s
optimize (3.11)	4m 26s
select (3.9)	5m 54s
julia (3.11)	19m 47s
select (3.11)	4m 44s
notebooks1 (3.9)	16m 24s
docs (3.11)	6m 48s
notebooks2 (3.9)	7m 31s
quality (3.11)	1m 47s
	3h 9m 28s