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changelog.md

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Changelog

All notable changes to the HCA metadata schema will be documented in this file. Starting with v5.0.0, the schema will be versioned independently. Therefore, this changelog will contain notes for independent updates/releases per schema.

Starting after v5.0.0 release, updates will be declared for schemas independently in the form [<schema_name>.json vX.Y.Z] - Release-date. Changes will be organized across six categories: Added, Changed, Removed, Fixed, Deprecated, and Security. The format is based on Keep a Changelog and (starting with v4.0.0) this project adheres to Semantic Versioning. Unreleased changes may be indicated under the Unreleased heading.

[type/protocol/biomaterial_collection/dissociation_protocol.json - v6.3.0] - 2025-01-21

Changed

Changed user_friendly name of reagent field

[type/protocol/biomaterial_collection/dissociation_protocol.json - v6.4.0] - 2025-01-21

Added

Added optional digestion_time field

[type/protocol/biomaterial_collection/dissociation_protocol.json - v6.5.0] - 2025-01-21

Added

Added optional digestion_time_unit field

[type/protocol/biomaterial_collection/dissociation_protocol.json - v6.6.0] - 2025-01-21

Added

Added optional digestion_temperature field

[type/protocol/biomaterial_collection/dissociation_protocol.json - v6.7.0] - 2025-01-21

Added

Added optional digestion_solution field

[module/project/hca_bionetwork.json - v2.0.0] - 2025-01-20

Changed

Changed enum value in hca_bionetwork.name. Fix #1600

[type/project/project.json - v20.0.0] - 2025-01-20

Changed

Changed enum value in hca_bionetwork.name. Fix #1600

[type/biomaterial/donor_organism.json - v17.1.0] - 2024-12-11

Added

Added non-required gender identity field.

[module/ontology/gender_identity_ontology.json - v1.0.0] - 2024-12-11

Added

Added ontology module for gender identity.

[module/biomaterial/medical_history.json - v7.0.0] - 2024-11-06

Changed

Changed medication field type Fix#1589

[module/ontology/medication_ontology.json - v1.0.0] - 2024-11-06

Added

Added medication ontology module Fix#1589

[type/biomaterial/donor_organism.json - v17.0.0] - 2024-11-06

Changed

Changed medication field type Fix#1589

[type/biomaterial/donor_organism.json - v16.4.0] - 2024-10-21

Added

Added comorbidities field in the donor_organism Fix#1569

[module/project/hca_bionetwork.json - v1.0.2] - 2024-10-14

Added

Added atlas names in hca_bionetwork

[type/project/project.json - v19.0.1] - 2024-10-14

Added

Added atlas names in hca_bionetwork

[module/biomaterial/disease_profile.json - v1.0.0] - 2024-09-30

Added

Added new disease profile module with COPD fields. Fixes#1572

[type/biomaterial/donor_organism.json - v16.3.0] - 2024-09-30

Added

Added an optional disease profile field in the donor_organism. Fixes#1572

[system/file_descriptor.json - v2.1.0] - 2024-09-24

Added

Added 'drs_uri' property to file_descriptor

[module/biomaterial/medical_history.json - v5.3.0] - 2024-09-16

Added

Added optional smoking related fields in medical_history module. Fix #1565

[module/biomaterial/medical_history.json - v6.0.0] - 2024-09-16

Removed

Removed smoking_history in medical_history module. Fix #1565

[type/biomaterial/donor_organism.json - v16.2.0] - 2024-09-16

Added

Added optional smoking related fields in medical_history module. Fix #1565

[module/ontology/file_content_ontology.json - v2.0.0] - 2024-08-28

Fixed

Fixed class from data:0006 to EDAM:0006. Fixes #1571

[type/file/analysis_file.json - v8.0.0] - 2024-08-28

Fixed

Fixed class from data:0006 to EDAM:0006. Fixes #1571

[type/file/supplementary_file.json - v3.0.0] - 2024-08-28

Fixed

Fixed class from data:0006 to EDAM:0006. Fixes #1571

[core/file/file_core.json - v7.0.0] - 2024-08-28

Fixed

Fixed class from data:0006 to EDAM:0006. Fixes #1571

[type/file/image_file.json - v3.0.0] - 2024-08-28

Fixed

Fixed class from data:0006 to EDAM:0006. Fixes #1571

[type/file/reference_file.json - v4.0.0] - 2024-08-28

Fixed

Fixed class from data:0006 to EDAM:0006. Fixes #1571

[type/file/sequence_file.json - v10.0.0] - 2024-08-28

Fixed

Fixed class from data:0006 to EDAM:0006. Fixes #1571

[module/biomaterial/medical_tests.json - v1.0.0] - 2024-08-13

Added

Added medical_tests module

[type/biomaterial/donor_organism.json - v16.1.0] - 2024-08-13

Added

Added optional medical_tests module in donor_organism. Fixes #1562

[type/file/sequence_file.json - v9.6.0] - 2024-07-15

Added

Added sequencing_run_batch field in the sequencing_file - Fixes#1557

[type/protocol/analysis/analysis_protocol.json - v10.3.0] - 2024-04-15

Added

Added intron_inclusion field in analysis_protocol Fixes#1554

[type/biomaterial/specimen_from_organism.json - v10.9.0] - 2024-03-22

Added

Added transplant_organ field in specimen_from_organism Fixes#1547"

[type/project/project.json - v19.0.0] - 2024-03-15

Added

Added DUOS id field. Fixes #1550

[type/project/project.json - v18.0.0] - 2024-03-04

Added

Added data_use_restriction field

[type/protocol/analysis/analysis_protocol.json - v10.2.0] - 2024-02-05

Added

Added gene_annotation_version field in analysis_protocol Fixes#1543

[type/protocol/analysis/analysis_protocol.json - v10.1.0] - 2023-11-07

Added

Added alignment_software & alignment_software_version field in analysis_protocol Fixes#1533

[core/biomaterial/biomaterial_core.json - v8.4.0] - 2023-08-22

Added

Added timecourse module. Fixes #1511

[type/biomaterial/donor_organism.json - v16.0.0] - 2023-08-22

Removed

Removed timecourse module.

[type/biomaterial/cell_suspension.json - v14.0.0] - 2023-08-22

Removed

Removed timecourse module.

[type/biomaterial/cell_line.json - v16.0.0] - 2023-08-22

Removed

Removed timecourse module.

[type/biomaterial/imaged_specimen.json - v3.5.0] - 2023-08-22

Added

Added timecourse module. Fixes #1511

[type/biomaterial/specimen_from_organism.json - v10.8.0] - 2023-08-22

Added

Added timecourse module. Fixes #1511

[type/biomaterial/organoid.json - v11.5.0] - 2023-08-22

Added

Added timecourse module. Fixes #1511

[module/project/hca_bionetwork.json - v1.0.1] - 2023-05-22

Added

Added new values to hca_atlas field

[type/project/project.json - v17.1.1] - 2023-05-22

Added

Added new values to hca_atlas field

[module/project/hca_bionetwork.json - v1.0.0] - 2023-04-20

Added

Added the hca_bionetwork module with four fields for recording bionetwork and atlas information

[type/project/project.json - v17.1.0] - 2023-04-20

Added

Added the hca_bionetwork module to be loaded in project

[type/biomaterial/specimen_from_organism.json - v10.6.0] - 2023-03-13

Added

Added new optional field adjacent_diseases. Fixes #1512

[type/file/analysis_file.json - v7.0.0] - 2023-01-30

Added

Added genome assembly and patch version. Fixes #1508.

[module/protocol/matrix.json - v2.0.0] - 2022-10-31

Fixed

Fixed typo in apostrophe. Fixes #1410

[type/protocol/analysis/analysis_protocol.json - v10.0.0] - 2022-10-31

Fixed

Fixed typo in apostrophe. Fixes #1410

[type/biomaterial/donor_organism.json - v15.6.1] - 2022-10-31

Fixed

Fixed typo in gestational age description

[core/file/file_core.json - v6.4.0] - 2022-09-16

Added

Added value to enum for file source. Fixes #1487.

[type/file/supplementary_file.json - v2.5.0] - 2022-09-16

Added

Added value to enum for file source. Fixes #1487.

[type/file/image_file.json - v2.5.0] - 2022-09-16

Added

Added value to enum for file source. Fixes #1487.

[type/file/sequence_file.json - v9.5.0] - 2022-09-16

Added

Added value to enum for file source. Fixes #1487.

[type/file/analysis_file.json - v6.5.0] - 2022-09-16

Added

Added value to enum for file source. Fixes #1487.

[type/file/reference_file.json - v3.5.0] - 2022-09-16

Added

Added value to enum for file source. Fixes #1487.

[system/links.json - v3.1.0] - 2022-09-16

Added

Added treatment protocol to protocol_type. Fixes #1488.

[module/ontology/contributor_role_ontology.json - v2.0.0] - 2022-08-23

Changed

Changed class to BFO:0000023 to match ontology changes.

[module/project/contact.json - v9.0.0] - 2022-08-23

Changed

Changed class to BFO:0000023 to match ontology changes.

[type/project/project.json - v17.0.0] - 2022-08-23

Changed

Changed class to BFO:0000023 to match ontology changes.

[type/protocol/imaging/imaging_preparation_protocol.json - v2.3.0] - 2022-08-19

Added

Added permeabilisation time field with time units. Fixes #1471

[module/ontology/contributor_role_ontology.json - v2.0.0] - 2022-08-23

Changed

Changed class to BFO:0000023 to match ontology changes.

[module/project/contact.json - v9.0.0] - 2022-08-23

Changed

Changed class to BFO:0000023 to match ontology changes.

[type/project/project.json - v17.0.0] - 2022-08-23

Changed

Changed class to BFO:0000023 to match ontology changes.

[type/protocol/biomaterial_collection/treatment_protocol.json - v1.0.0] - 2022-08-01

Added

Added Treatment protocol entity. Fixes #1428

[module/ontology/treatment_method_ontology.json - v1.0.0] - 2022-08-01

Added

Added Treatment protocol method ontology to be used to annotate the Treatment protocol method. Fixes #1428

[module/ontology/target_pathway_ontology.json - v1.0.0] - 2022-08-01

Added

Added Treatment protocol target pathway ontology which will be used to describe the target pathway that is targeted by a treatment method. Fixes #1428

[module/ontology/disease_ontology.json - v5.4.0] - 2022-05-24

Added

Added the phenotype branch to graphRestrictions. Fixes #1460

[type/biomaterial/cell_line.json - v15.1.0] - 2022-05-24

Added

Added the phenotype branch to graphRestrictions. Fixes #1460

[type/biomaterial/donor_organism.json - v15.6.0] - 2022-05-24

Added

Added the phenotype branch to graphRestrictions. Fixes #1460

[type/biomaterial/specimen_from_organism.json - v10.5.0] - 2022-05-24

Added

Added the phenotype branch to graphRestrictions. Fixes #1460

[module/ontology/file_content_ontology.json - v1.1.0] - 2022-03-24

Added

Added information entity branch to graphRestrictions. Fixes #1450

[type/protocol/imaging/imaging_protocol.json - v11.4.0] - 2022-03-08

Changed

Changed overlapping_tiles, numerical_aperture and pixel_size non-required. Fixes #1441

[type/protocol/imaging/imaging_protocol.json - v11.3.0] - 2021-12-20

Removed

Removed channel and probe from required fields. #Fixes 1420

[type/project/project.json - v16.0.0] - 2021-12-20

Added

Added anchors to ega_accessions and dbgap_accessions. Fixes #1425

[type/file/sequence_file.json - v9.3.1] - 2021-10-29

Added

Added read3, read4 to read index enum. Fixes #1401

[module/process/sequencing/barcode.json - v5.2.7] - 2021-10-29

Added

Added Read 3, Read 4 to barcode read enum. Fixes #1401

[type/protocol/sequencing/library_preparation_protocol.json - v6.3.1] - 2021-10-29

Added

Added Read 3, Read 4 to barcode read enum. Fixes #1401

[type/protocol/sequencing/library_preparation_protocol.json - v6.3.0] - 2021-10-12

Added

Added spatial barcode field loading barcodes module

[module/project/publication.json - v7.0.0] - 2021-08-13

Added

Added required official_hca_publication field. Fixes #1345

[type/biomaterial/cell_line.json - v15.0.0] - 2021-08-13

Added

Added required official_hca_publication field. Fixes #1345

[type/project/project.json - v15.0.0] - 2021-08-13

Added

Added required official_hca_publication field. Fixes #1345

[type/project/project.json - v14.3.0] - 2021-07-26

Added

Added project-level cell count. Fixes #1337.

[module/protocol/matrix.json - v1.0.0] - 2021-03-24

Added

Added matrix module

[type/protocol/analysis/analysis_protocol.json - v9.2.0] - 2021-03-24

Changed

Changed 'computational_method' field to optional, added matrix module field

[type/file/analysis_file.json - v6.3.0] - 2021-03-24

Added

Added optional 'matrix_cell_count' field.

[core/file/file_core.json - v6.2.0] - 2021-03-24

Added

Added optional file_source field.

[type/file/sequence_file.json - v9.3.0] - 2021-03-24

Added

Added optional file_source field.

[type/file/supplementary_file.json - v2.3.0] - 2021-03-24

Added

Added optional file_source field.

[type/file/reference_file.json - v3.3.0] - 2021-03-24

Added

Added optional file_source field.

[type/file/image_file.json - v2.3.0] - 2021-03-24

Added

Added optional file_source field.

[type/project/project.json - v14.2.0] - 2021-03-16

Added

Added ega_accessions and dbgap_accessions. Fixes #1336.

[system/links.json - v3.0.0] - 2021-03-04

Changed

Changed protocol_type from string to enum of strings. Fixes #1333

[system/file_descriptor.json - v2.0.0] - 2020-06-29

Removed

Removed schema major minor versions.

[system/file_descriptor.json - v1.0.0] - 2020-06-25

Added

Added file_descriptor schema

[system/links.json - v2.1.1] - 2020-06-19

Fixed

Fixed incomplete refs urls Fixes#1303

[type/process/analysis/analysis_process.json - v12.0.0] - 2020-06-05

Changed

Changed reference_bundle properties to reference_files and removed input_bundles. Fixes #1275

[system/links.json - v2.1.0] - 2020-06-08

Added

Added supplementary_links. Fixes #1285.

[system/links.json - v2.0.0] - 2020-05-20

Changed

Changed properties for links to capture entire processes. Fixes #1278

[core/biomaterial/biomaterial_core.json - v8.2.0] - 2019-08-29

Changed

Changed pattern match in fields 'insdc_sample_accession' and 'schema_version'. Fixes #1090

[type/biomaterial/specimen_from_organism.json - v10.4.0] - 2019-08-29

Changed

Changed pattern match in fields 'insdc_sample_accession' and 'schema_version'. Fixes #1090

[type/biomaterial/cell_suspension.json - v13.3.0] - 2019-08-29

Changed

Changed pattern match in fields 'insdc_sample_accession' and 'schema_version'. Fixes #1090

[type/biomaterial/imaged_specimen.json - v3.3.0] - 2019-08-29

Changed

Changed pattern match in fields 'insdc_sample_accession' and 'schema_version'. Fixes #1090

[type/biomaterial/cell_line.json - v14.5.0] - 2019-08-29

Changed

Changed pattern match in fields 'insdc_sample_accession' and 'schema_version'. Fixes #1090

[type/biomaterial/donor_organism.json - v15.5.0] - 2019-08-29

Changed

Changed pattern match in fields 'insdc_sample_accession' and 'schema_version'. Fixes #1090

[type/biomaterial/organoid.json - v11.3.0] - 2019-08-29

Changed

Changed pattern match in fields 'insdc_sample_accession' and 'schema_version'. Fixes #1090

[system/provenance.json - v1.1.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/protocol/protocol.json - v7.1.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/protocol/biomaterial_collection/differentiation_protocol.json - v2.2.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/biomaterial/cell_suspension.json - v13.2.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/protocol/biomaterial_collection/dissociation_protocol.json - v6.2.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/file/reference_file.json - v3.2.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/biomaterial/organoid.json - v11.2.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/process/process.json - v9.2.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/file/analysis_file.json - v6.2.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/protocol/biomaterial_collection/ipsc_induction_protocol.json - v3.2.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/protocol/analysis/analysis_protocol.json - v9.1.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/file/sequence_file.json - v9.2.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/protocol/biomaterial_collection/aggregate_generation_protocol.json - v2.1.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/protocol/biomaterial_collection/enrichment_protocol.json - v3.1.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/protocol/biomaterial_collection/collection_protocol.json - v9.2.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/protocol/sequencing/sequencing_protocol.json - v10.1.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/file/supplementary_file.json - v2.2.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/biomaterial/imaged_specimen.json - v3.2.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/biomaterial/donor_organism.json - v15.4.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/protocol/imaging/imaging_preparation_protocol.json - v2.2.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/file/image_file.json - v2.2.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/project/project.json - v14.1.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/process/analysis/analysis_process.json - v11.1.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/biomaterial/cell_line.json - v14.4.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/protocol/sequencing/library_preparation_protocol.json - v6.2.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/protocol/imaging/imaging_protocol.json - v11.2.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[type/biomaterial/specimen_from_organism.json - v10.3.0] - 2019-07-25

Added

Added two optional fields to represent schema major and minor versions. Fixes #1076.

[module/ontology/biological_macromolecule_ontology.json - v5.3.5] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/cell_cycle_ontology.json - v5.3.6] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/cell_type_ontology.json - v5.3.6] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/cellular_component_ontology.json - v1.0.5] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/development_stage_ontology.json - v5.3.6] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/disease_ontology.json - v5.3.8] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/enrichment_ontology.json - v1.2.6] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/ethnicity_ontology.json - v5.3.9] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/instrument_ontology.json - v5.3.6] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/length_unit_ontology.json - v5.3.5] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/library_amplification_ontology.json - v1.2.5] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/library_construction_ontology.json - v1.2.5] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/mass_unit_ontology.json - v5.3.5] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/microscopy_ontology.json - v1.0.5] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/organ_part_ontology.json - v5.3.5] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/process_type_ontology.json - v5.3.5] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/protocol_type_ontology.json - v5.3.5] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/sequencing_ontology.json - v1.1.5] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/species_ontology.json - v5.3.5] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/strain_ontology.json - v5.3.6] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/time_unit_ontology.json - v5.3.5] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[type/process/analysis/analysis_process.json - v11.0.3] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[type/protocol/imaging/imaging_preparation_protocol.json - v2.1.2] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[type/protocol/imaging/imaging_protocol.json - v11.1.4] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[type/protocol/sequencing/library_preparation_protocol.json - v6.1.2] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[type/biomaterial/cell_line.json - v14.3.2] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[type/biomaterial/cell_suspension.json - v13.1.2] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/protocol/probe.json - v1.1.1] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[type/biomaterial/donor_organism.json - v15.3.3] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[type/biomaterial/specimen_from_organism.json - v10.2.2] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/biomaterial/human_specific.json - v1.0.11] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[type/protocol/sequencing/sequencing_protocol.json - v10.0.3] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[type/biomaterial/organoid.json - v11.1.3] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/biomaterial/cell_morphology.json - v6.1.7] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[type/biomaterial/imaged_specimen.json - v3.1.2] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[type/protocol/biomaterial_collection/dissociation_protocol.json - v6.1.2] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[type/process/process.json - v9.1.2] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[type/protocol/biomaterial_collection/collection_protocol.json - v9.1.2] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[type/protocol/analysis/analysis_protocol.json - v9.0.2] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[type/protocol/protocol.json - v7.0.2] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[type/protocol/biomaterial_collection/enrichment_protocol.json - v3.0.2] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[type/file/reference_file.json - v3.1.2] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/biomaterial/mouse_specific.json - v1.0.8] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/biomaterial/timecourse.json - v2.0.2] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/biomaterial/preservation_storage.json - v6.1.1] - 2019-07-25

Fixed

Fixed description of schema. Fixes #1035.

[module/ontology/file_content_ontology.json - v1.0.1] - 2019-06-28

Fixed

Fixed identifiers to be lower-cased in ontology classes and example. Fixes #1037

[type/file/analysis_file.json - v6.1.1] - 2019-06-28

Fixed

Fixed identifiers to be lower-cased in ontology classes and example. Fixes #1037

[type/file/image_file.json - v2.1.1] - 2019-06-28

Fixed

Fixed identifiers to be lower-cased in ontology classes and example. Fixes #1037

[core/file/file_core.json - v6.1.1] - 2019-06-28

Fixed

Fixed identifiers to be lower-cased in ontology classes and example. Fixes #1037

[type/file/supplementary_file.json - v2.1.1] - 2019-06-28

Fixed

Fixed identifiers to be lower-cased in ontology classes and example. Fixes #1037

[type/file/reference_file.json - v3.1.1] - 2019-06-28

Fixed

Fixed identifiers to be lower-cased in ontology classes and example. Fixes #1037

[type/file/sequence_file.json - v9.1.1] - 2019-06-28

Fixed

Fixed identifiers to be lower-cased in ontology classes and example. Fixes #1037

[module/ontology/file_format_ontology.json - v1.0.0] - 2019-06-13

Added

Added new ontology module. Partially fixes #812

[core/file/file_core.json - v6.1.0] - 2019-06-10

Added

Added content_description field. Fixes #542.

[module/ontology/file_content_ontology.json - v1.0.0] - 2019-06-10

Added

Added new file_content_ontology schema. Fixes #542.

[type/file/image_file.json - v2.1.0] - 2019-06-10

Added

Added content_description field. Fixes #542.

[type/file/reference_file.json - v3.1.0] - 2019-06-10

Added

Added content_description field. Fixes #542.

[type/file/analysis_file.json - v6.1.0] - 2019-06-10

Added

Added content_description field. Fixes #542.

[type/file/supplementary_file.json - v2.1.0] - 2019-06-10

Added

Added content_description field. Fixes #542.

[type/file/sequence_file.json - v9.1.0] - 2019-06-10

Added

Added content_description field. Fixes #542.

[system/provenance.json - v1.0.4] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/protocol/biomaterial_collection/enrichment_protocol.json - v3.0.1] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/file/reference_file.json - v3.0.1] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/file/sequence_file.json - v9.0.1] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/process/analysis/analysis_process.json - v11.0.2] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/biomaterial/organoid.json - v11.1.2] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/file/image_file.json - v2.0.1] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/biomaterial/cell_line.json - v14.3.1] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/protocol/biomaterial_collection/ipsc_induction_protocol.json - v3.1.2] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/protocol/biomaterial_collection/collection_protocol.json - v9.1.1] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/protocol/biomaterial_collection/dissociation_protocol.json - v6.1.1] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/file/supplementary_file.json - v2.0.1] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/biomaterial/donor_organism.json - v15.3.2] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/biomaterial/cell_suspension.json - v13.1.1] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/protocol/analysis/analysis_protocol.json - v9.0.1] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/biomaterial/specimen_from_organism.json - v10.2.1] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/process/process.json - v9.1.1] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/protocol/imaging/imaging_preparation_protocol.json - v2.1.1] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/project/project.json - v14.0.2] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/protocol/biomaterial_collection/aggregate_generation_protocol.json - v2.0.1] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/protocol/imaging/imaging_protocol.json - v11.1.3] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/protocol/sequencing/sequencing_protocol.json - v10.0.2] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/protocol/protocol.json - v7.0.1] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/protocol/sequencing/library_preparation_protocol.json - v6.1.1] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/biomaterial/imaged_specimen.json - v3.1.1] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/file/analysis_file.json - v6.0.1] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[type/protocol/biomaterial_collection/differentiation_protocol.json - v2.1.1] - 2019-06-04

Added

Added user friendly names to fields submission_date, update_date, accession, submitter_id, document_id, updater_id. Fixes #989

[module/protocol/channel.json - v2.0.4] - 2019-05-30

Changed

Changed multiplexed property friendly name. Fixes #963

[module/project/contact.json - v8.0.1] - 2019-05-30

Changed

Changed corresponding_contributor property friendly name. Fixes #963

[module/biomaterial/death.json - v5.5.1] - 2019-05-30

Changed

Changed normothermic_regional_perfusion and cold_perfused friendly names. Fixes #963

[type/protocol/sequencing/sequencing_protocol.json - v10.0.1] - 2019-05-30

Changed

Changed paired_end property friendly name. Fixes #963

[type/protocol/biomaterial_collection/ipsc_induction_protocol.json - v3.1.1] - 2019-05-30

Changed

Changed pluripotency_vector_removed property friendly name. Fixes #963

[type/protocol/imaging/imaging_protocol.json - v11.1.2] - 2019-05-30

Changed

Changed overlapping_tiles property friendly name. Fixes #963

[type/biomaterial/donor_organism.json - v15.3.1] - 2019-05-30

Changed

Changed is_living property friendly name. Fixes #963

[type/biomaterial/organoid.json - v11.1.1] - 2019-05-30

Changed

Changed embedded_in_matrigel property friendly name. Fixes #963

[type/project/project.json - v14.0.1] - 2019-05-30

Changed

Changed corresponding_contributor property friendly name. Fixes #963

[type/protocol/imaging/imaging_protocol.json - v11.1.1] - 2019-05-15

Fixed

Fixed probe field where relevant in the imaging_protocol. Fixes #980.

[type/process/process.json - v9.1.0] - 2019-05-14

Added

Added start_time and end_time to process.json. Fixes #742.

[type/biomaterial/cell_line.json - v14.3.0] - 2019-04-29

Changed

Changed format for date_established property. Fixes #966

[module/biomaterial/death.json - v5.5.0] - 2019-04-29

Changed

Changed format for time_of_death property. Fixes #966

[type/biomaterial/specimen_from_organism.json - v10.2.0] - 2019-04-29

Changed

Changed format for collection_time property. Fixes #966

[module/process/purchased_reagents.json - v6.1.0] - 2019-04-29

Changed

Changed format for expiry_date property. Fixes #966

[type/biomaterial/donor_organism.json - v15.3.0] - 2019-04-29

Changed

Changed format for time_of_death property. Fixes #966

[type/protocol/biomaterial_collection/collection_protocol.json - v9.1.0] - 2019-04-29

Changed

Changed format for expiry_date property. Fixes #966

[module/protocol/probe.json - v1.1.0] - 2019-04-29

Changed

Changed format for expiry_date property. Fixes #966

[type/protocol/biomaterial_collection/dissociation_protocol.json - v6.1.0] - 2019-04-29

Changed

Changed format for expiry_date property. Fixes #966

[type/protocol/biomaterial_collection/differentiation_protocol.json - v2.1.0] - 2019-04-29

Changed

Changed format for expiry_date property. Fixes #966

[type/protocol/sequencing/library_preparation_protocol.json - v6.1.0] - 2019-04-29

Changed

Changed format for expiry_date property. Fixes #966

[module/protocol/target.json - v1.1.0] - 2019-04-29

Changed

Changed format for expiry_date property. Fixes #966

[type/protocol/biomaterial_collection/ipsc_induction_protocol.json - v3.1.0] - 2019-04-29

Changed

Changed format for expiry_date property. Fixes #966

[type/protocol/imaging/imaging_protocol.json - v11.1.0] - 2019-04-29

Changed

Changed format for expiry_date property. Fixes #966

[type/process/analysis/analysis_process.json - v11.0.1] - 2019-04-29

Added

Added description, example, user-friendly name, and guidelines to all definition fields. Fixes #955.

[type/biomaterial/donor_organism.json - v15.2.0] - 2019-04-26

Added

Added not applicable to is_living. Fixes #921

[type/process/analysis/analysis_process.json - v11.0.0] - 2019-04-26

Changed

Changed process_type to type. Fixes #931

[type/process/process.json - v9.0.0] - 2019-04-26

Changed

Changed process_type to type. Fixes #931

[type/protocol/analysis/analysis_protocol.json - v9.0.0] - 2019-04-26

Changed

Changed protocol_type to type. Fixes #931

[type/protocol/protocol.json - v7.0.0] - 2019-04-26

Changed

Changed protocol_type to type. Fixes #931

[module/project/contact.json - v8.0.0] - 2019-04-25

Changed

Changed contact_name to name. Fixes #927.

[type/project/project.json - v14.0.0] - 2019-04-25

Changed

Changed contact_name to name. Fixes #927.

[core/file/file_core.json - v6.0.0] - 2019-04-23

Changed

Changed file_format to format. Fixes #375.

[type/file/reference_file.json - v3.0.0] - 2019-04-23

Changed

Changed file_format to format. Fixes #375.

[type/file/supplementary_file.json - v2.0.0] - 2019-04-23

Changed

Changed file_format to format. Fixes #375.

[type/file/image_file.json - v2.0.0] - 2019-04-23

Changed

Changed file_format to format. Fixes #375.

[type/file/analysis_file.json - v6.0.0] - 2019-04-23

Changed

Changed file_format to format. Fixes #375.

[type/file/sequence_file.json - v9.0.0] - 2019-04-23

Changed

Changed file_format to format. Fixes #375.

[type/biomaterial/donor_organism.json - v15.1.1] - 2019-04-18

Changed

Changed description, guidelines and example for gestational_age. Fixes #911.

[core/biomaterial/biomaterial_core.json - v8.1.0] - 2019-04-18

Added

Added HDBR_accession to biomaterial_core. Fixes #945.

[type/biomaterial/cell_line.json - v14.2.0] - 2019-04-18

Added

Added HDBR_accession to biomaterial_core. Fixes #945.

[type/biomaterial/imaged_specimen.json - v3.1.0] - 2019-04-18

Added

Added HDBR_accession to biomaterial_core. Fixes #945.

[type/biomaterial/cell_suspension.json - v13.1.0] - 2019-04-18

Added

Added HDBR_accession to biomaterial_core. Fixes #945.

[type/biomaterial/organoid.json - v11.1.0] - 2019-04-18

Added

Added HDBR_accession to biomaterial_core. Fixes #945.

[type/biomaterial/donor_organism.json - v15.1.0] - 2019-04-18

Added

Added HDBR_accession to biomaterial_core. Fixes #945.

[type/biomaterial/specimen_from_organism.json - v10.1.0] - 2019-04-18

Added

Added HDBR_accession to biomaterial_core. Fixes #945.

[type/biomaterial/cell_suspension.json - v13.0.0] - 2019-04-18

Changed

Changed selected_cell_type to selected_cell_types. Fixes #923.

[type/biomaterial/cell_line.json - v14.1.0] - 2019-04-18

Added

Added optional timecourse field. Fixes #917.

[type/protocol/biomaterial_collection/ipsc_induction_protocol.json - v3.0.0] - 2019-04-16

Changed

Changed ipsc_induction_method to method, ipsc_induction_factors to reprogramming_factors, protocol_reagents to reagents. Removed ipsc_induction_produced_in_house. Fixes #926.

[module/protocol/probe.json - v1.0.0] - 2019-04-11

Added

Added new probe.json module. Fixes #813

[core/process/process_core.json - v10.0.0] - 2019-04-11

Changed

Changed process_location to location and operator to operators. Fixes #930.

[type/process/process.json - v8.0.0] - 2019-04-11

Changed

Changed process_location to location and operator to operators. Fixes #930.

[type/process/analysis/analysis_process.json - v10.0.0] - 2019-04-11

Changed

Changed process_location to location and operator to operators. Fixes #930.

[type/protocol/biomaterial_collection/enrichment_protocol.json - v3.0.0] - 2019-04-11

Changed

Changed 'enrichment_method' to 'method', 'min_size_selected' to 'minimum_size' and 'max_size_selected' to 'maximum_size'. Fixes #925.

[type/protocol/biomaterial_collection/differentiation_protocol.json - v2.0.0] - 2019-04-09

Changed

Changed differentiation_method to method. Fixes #924.

[core/biomaterial/biomaterial_core.json - v8.0.0] - 2019-04-09

Changed

Changed biosd_biomaterial to biosamples_accession and insdc_biomaterial to insdc_sample_accession. Fixes #929

[type/biomaterial/specimen_from_organism.json - v10.0.0] - 2019-04-09

Changed

Changed biosd_biomaterial to biosamples_accession and insdc_biomaterial to insdc_sample_accession. Fixes #929

[type/biomaterial/cell_suspension.json - v12.0.0] - 2019-04-09

Changed

Changed biosd_biomaterial to biosamples_accession and insdc_biomaterial to insdc_sample_accession. Fixes #929

[type/biomaterial/organoid.json - v11.0.0] - 2019-04-09

Changed

Changed biosd_biomaterial to biosamples_accession and insdc_biomaterial to insdc_sample_accession. Fixes #929

[type/biomaterial/cell_line.json - v14.0.0] - 2019-04-09

Changed

Changed biosd_biomaterial to biosamples_accession and insdc_biomaterial to insdc_sample_accession. Fixes #929

[type/biomaterial/donor_organism.json - v15.0.0] - 2019-04-09

Changed

Changed biosd_biomaterial to biosamples_accession and insdc_biomaterial to insdc_sample_accession. Fixes #929

[type/biomaterial/imaged_specimen.json - v3.0.0] - 2019-04-09

Changed

Changed biosd_biomaterial to biosamples_accession and insdc_biomaterial to insdc_sample_accession. Fixes #929

[module/project/publication.json - v6.0.0] - 2019-04-08

Changed

Changed publication_title to title and publication_url to url. Fixes #928.

[type/project/project.json - v13.0.0] - 2019-04-08

Changed

Changed publication_title to title and publication_url to url. Fixes #928.

[type/biomaterial/cell_line.json - v13.0.0] - 2019-04-08

Changed

Changed publication_title to title and publication_url to url. Fixes #928.

[type/biomaterial/cell_line.json - v12.0.0] - 2019-04-08

Changed

Changed cell_line_type to type. Fixes #935.

[module/project/contact.json - v7.0.0] - 2019-04-08

Changed

Changed project_role from enum to ontology. Fixes #894

[type/project/project.json - v12.0.0] - 2019-04-08

Changed

Changed project_role from enum to ontology. Fixes #894

[module/biomaterial/preservation_storage.json - v6.1.0] - 2019-04-04

Added

Added 'frozen at -80C' to storage_method field. Fixes #916.

[type/protocol/imaging/imaging_preparation_protocol.json - v2.1.0] - 2019-04-04

Added

Added 'frozen at -80C' to storage_method field. Fixes #916.

[type/biomaterial/specimen_from_organism.json - v9.1.0] - 2019-04-04

Added

Added 'frozen at -80C' to storage_method field. Fixes #916.

[module/ontology/contributor_role_ontology.json - v1.0.0] - 2019-04-02

Added

Added new contributor_role_ontology schema. Fixes #893.

[module/protocol/channel.json - v2.0.3] - 2019-03-29

Changed

Changed example and guidelines in filter_range. Fixes#878.

[type/protocol/imaging/imaging_protocol.json - v11.0.13] - 2019-03-29

Changed

Changed example and guidelines in filter_range. Fixes#878.

[type/project/project.json - v11.1.0] - 2019-03-25

Added

Added optional biostudies_accesssion field. Fixes #852.

[module/process/sequencing/plate_based_sequencing.json - v3.0.0] - 2019-03-15

Changed

Changed well and plate ID to label. Fixes #837.

[type/biomaterial/cell_suspension.json - v11.0.0] - 2019-03-15

Changed

Changed well and plate ID to label. Fixes #837.

[module/biomaterial/medical_history.json - v5.2.8] - 2019-03-12

Added

Added second example to test_results. Fixes #846.

[type/biomaterial/donor_organism.json - v14.0.7] - 2019-03-12

Added

Added second example to test_results. Fixes #846.

[type/biomaterial/specimen_from_organism.json - v9.0.0] - 2019-03-08

Changed

Changed organ_part to organ_parts since it is an array. Fixes #648.

[type/protocol/sequencing/library_preparation_protocol.json - v6.0.0] - 2019-03-01

Changed

Changed nucleic_acid_source field to be required. Fixes #824.

[type/process/analysis/analysis_process.json - v9.0.0] - 2019-03-01

Removed

Removed required outputs fields. Fixes #664.

[module/process/sequencing/insdc_experiment.json - v2.0.0] - 2019-02-28

Fixed

Fixed insdc_experiment_accession field to adhere to Style Guide. Fixes #809.

[module/process/sequencing/plate_based_sequencing.json - v2.0.0] - 2019-02-28

Fixed

Fixed well_quality field. Fixes #809.

[type/process/process.json - v7.0.0] - 2019-02-28

Fixed

Fixed insdc_experiment_accession field to adhere to Style Guide. Fixes #809.

[type/biomaterial/cell_suspension.json - v10.0.0] - 2019-02-28

Fixed

Fixed well_quality field. Fixes #809.

[module/project/contact.json - v6.1.5] - 2019-02-28

Added

Added administrator value to project role enum. Fixes #845.

[type/project/project.json - v11.0.1] - 2019-02-28

Added

Added administrator value to project role enum. Fixes #845.

[module/biomaterial/state_of_specimen.json - v6.0.0] - 2019-02-25

Fixed

Fixed array field names to be plural to adhere to Style Guide. Fixes #792.

[type/biomaterial/specimen_from_organism.json - v8.0.0] - 2019-02-25

Fixed

Fixed array field names to be plural to adhere to Style Guide. Fixes #792.

[module/protocol/target.json - v1.0.9] - 2019-02-21

Changed

Changed examples in molecule_id and assay_type. Fixes #830.

[type/protocol/imaging/imaging_protocol.json - v11.0.12] - 2019-02-21

Changed

Changed examples in molecule_id and assay_type. Fixes #830.

[module/biomaterial/preservation_storage.json - v6.0.2] - 2019-02-20

Added

Added enum value to preservation_storage. Fixes #831.

[type/biomaterial/specimen_from_organism.json - v7.0.4] - 2019-02-20

Added

Added enum value to preservation_storage. Fixes #831.

[type/protocol/imaging/imaging_preparation_protocol.json - v2.0.3] - 2019-02-20

Added

Added enum value to preservation_storage. Fixes #831.

[type/file/sequence_file.json - v8.0.0] - 2019-02-13

Fixed

Fixed array field names to be plural to adhere to Style Guide. Fixes #805.

[type/biomaterial/cell_line.json - v11.0.0] - 2019-02-13

Changed

Changed date_established from date-time to date format. Fixes #821.

[module/protocol/target.json - v1.0.8] - 2019-02-12

Changed

Changed u-f, examples, and description for some fields. Fixes #816.

[module/protocol/channel.json - v2.0.2] - 2019-02-12

Changed

Changed u-f, examples, and description for some fields. Fixes #816.

[module/biomaterial/medical_history.json - v5.2.6] - 2019-02-12

Added

Added examples. Fixes #816.

[type/protocol/imaging/imaging_protocol.json - v11.0.11] - 2019-02-12

Changed

Changed u-f, examples, and description for some fields. Fixes #816.

[type/biomaterial/donor_organism.json - v14.0.5] - 2019-02-12

Added

Added examples. Fixes #816.

[module/ontology/ethnicity_ontology.json - v5.3.8] - 2019-02-12

Changed

Changed hancestro example from underscore to colon

[module/biomaterial/human_specific.json - v1.0.10] - 2019-02-12

Changed

Changed hancestro example from underscore to colon

[type/biomaterial/donor_organism.json - v14.0.4] - 2019-02-12

Changed

Changed hancestro example from underscore to colon

[type/protocol/imaging/imaging_preparation_protocol.json - v2.0.2] - 2019-02-12

Changed

Changed guidelines, descriptions, and user-friendly names. Fixes #796.

[module/protocol/target.json - v1.0.7] - 2019-02-12

Changed

Changed guidelines, descriptions, and user-friendly names. Fixes #797.

[type/protocol/imaging/imaging_protocol.json - v11.0.10] - 2019-02-12

Changed

Changed guidelines, descriptions, and user-friendly names. Fixes #797.

[type/protocol/biomaterial_collection/collection_protocol.json - v9.0.0] - 2019-02-12

Fixed

Fixed reagent and method field names to remove redundancy to adhere to Style Guide. Fixes #807.

[type/protocol/biomaterial_collection/dissociation_protocol.json - v6.0.0] - 2019-02-12

Fixed

Fixed reagent and method field names to remove redundancy to adhere to Style Guide. Fixes #807.

[type/protocol/sequencing/sequencing_protocol.json - v10.0.0] - 2019-02-12

Fixed

Fixed method field name to be consistent with other protocols. Fixes #807.

[type/protocol/sequencing/library_preparation_protocol.json - v5.0.0] - 2019-02-12

Fixed

Fixed method field name to be consistent with other protocols. Fixes #807.

[type/file/image_file.json - v1.0.4] - 2019-02-08

Added

Added user_friendly name to file_core in image_file. Fixes #798

[type/biomaterial/cell_suspension.json - v9.0.0] - 2019-02-05

Changed

Changed total_estimated_cells to estimated_cell_count. Fixes #649.

[module/process/sequencing/plate_based_sequencing.json - v1.0.6] - 2019-02-05

Fixed

Fixed inconsistencies with Style Guide as caught by linter. Fixes #789

[module/process/sequencing/barcode.json - v5.2.6] - 2019-02-05

Fixed

Fixed inconsistencies with Style Guide as caught by linter. Fixes #789

[system/links.json - v1.1.5] - 2019-02-05

Fixed

Fixed inconsistencies with Style Guide as caught by linter. Fixes #789

[core/biomaterial/biomaterial_core.json - v7.0.5] - 2019-02-05

Fixed

Fixed inconsistencies with Style Guide as caught by linter. Fixes #789

[module/ontology/disease_ontology.json - v5.3.7] - 2019-02-05

Fixed

Fixed inconsistencies with Style Guide as caught by linter. Fixes #789

[type/biomaterial/cell_suspension.json - v8.7.4] - 2019-02-05

Fixed

Fixed inconsistencies with Style Guide as caught by linter. Fixes #789

[type/protocol/sequencing/library_preparation_protocol.json - v4.4.6] - 2019-02-05

Fixed

Fixed inconsistencies with Style Guide as caught by linter. Fixes #789

[type/biomaterial/imaged_specimen.json - v2.0.7] - 2019-02-05

Fixed

Fixed inconsistencies with Style Guide as caught by linter. Fixes #789

[type/biomaterial/specimen_from_organism.json - v7.0.3] - 2019-02-05

Fixed

Fixed inconsistencies with Style Guide as caught by linter. Fixes #789

[type/biomaterial/donor_organism.json - v14.0.3] - 2019-02-05

Fixed

Fixed inconsistencies with Style Guide as caught by linter. Fixes #789

[type/biomaterial/organoid.json - v10.0.2] - 2019-02-05

Fixed

Fixed inconsistencies with Style Guide as caught by linter. Fixes #789

[type/biomaterial/cell_line.json - v10.0.4] - 2019-02-05

Fixed

Fixed inconsistencies with Style Guide as caught by linter. Fixes #789

[module/protocol/target.json - v1.0.6] - 2019-02-01

Fixed

Fixed channel_id field which was declared as an array but missing items{} block Fixes #777

[type/protocol/imaging/imaging_protocol.json - v11.0.9] - 2019-02-01

Fixed

Fixed channel_id field which was declared as an array but missing items{} block Fixes #777

[module/ontology/biological_macromolecule_ontology.json - v5.3.4] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/cell_cycle_ontology.json - v5.3.5] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/cell_type_ontology.json - v5.3.5] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/cellular_component_ontology.json - v1.0.4] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/development_stage_ontology.json - v5.3.5] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/disease_ontology.json - v5.3.6] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/enrichment_ontology.json - v1.2.5] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/ethnicity_ontology.json - v5.3.7] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/instrument_ontology.json - v5.3.5] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/length_unit_ontology.json - v5.3.4] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/library_amplification_ontology.json - v1.2.4] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/library_construction_ontology.json - v1.2.4] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/mass_unit_ontology.json - v5.3.4] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/microscopy_ontology.json - v1.0.4] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/organ_ontology.json - v5.3.7] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/organ_part_ontology.json - v5.3.4] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/process_type_ontology.json - v5.3.4] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/protocol_type_ontology.json - v5.3.4] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/sequencing_ontology.json - v1.1.4] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/species_ontology.json - v5.3.4] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/strain_ontology.json - v5.3.5] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/ontology/time_unit_ontology.json - v5.3.4] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[type/protocol/sequencing/library_preparation_protocol.json - v4.4.5] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[type/biomaterial/cell_line.json - v10.0.3] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[type/biomaterial/cell_suspension.json - v8.7.3] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[type/protocol/imaging/imaging_protocol.json - v11.0.8] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/protocol/target.json - v1.0.5] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[type/biomaterial/donor_organism.json - v14.0.2] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[type/biomaterial/specimen_from_organism.json - v7.0.2] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/biomaterial/human_specific.json - v1.0.9] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[type/protocol/sequencing/sequencing_protocol.json - v9.0.11] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/biomaterial/cell_morphology.json - v6.1.6] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[type/biomaterial/organoid.json - v10.0.1] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[type/biomaterial/imaged_specimen.json - v2.0.6] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[type/protocol/biomaterial_collection/dissociation_protocol.json - v5.0.8] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[type/protocol/protocol.json - v6.3.9] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[type/process/analysis/analysis_process.json - v8.0.8] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[type/protocol/biomaterial_collection/enrichment_protocol.json - v2.2.9] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[type/protocol/biomaterial_collection/collection_protocol.json - v8.2.11] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[type/protocol/analysis/analysis_protocol.json - v8.0.7] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[type/process/process.json - v6.0.7] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[type/file/reference_file.json - v2.2.10] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/biomaterial/mouse_specific.json - v1.0.7] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[type/protocol/imaging/imaging_preparation_protocol.json - v2.0.1] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/biomaterial/timecourse.json - v2.0.1] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/biomaterial/preservation_storage.json - v6.0.1] - 2019-02-01

Fixed

Fixed descriptions to end in full stops. Fixes #785

[module/protocol/channel.json - v2.0.1] - 2019-02-01

Fixed

Fixed examples that were separated by comma instead of semi-colon. Fixes #784

[module/protocol/target.json - v1.0.4] - 2019-02-01

Fixed

Fixed examples that were separated by comma instead of semi-colon. Fixes #784

[type/biomaterial/cell_line.json - v10.0.2] - 2019-02-01

Fixed

Fixed examples that were separated by comma instead of semi-colon. Fixes #784

[type/biomaterial/imaged_specimen.json - v2.0.5] - 2019-02-01

Fixed

Fixed examples that were separated by comma instead of semi-colon. Fixes #784

[type/file/reference_file.json - v2.2.9] - 2019-02-01

Fixed

Fixed examples that were separated by comma instead of semi-colon. Fixes #784

[type/file/supplementary_file.json - v1.1.8] - 2019-02-01

Fixed

Fixed examples that were separated by comma instead of semi-colon. Fixes #784

[type/protocol/imaging/imaging_protocol.json - v11.0.7] - 2019-02-01

Fixed

Fixed examples that were separated by comma instead of semi-colon. Fixes #784

[type/protocol/sequencing/sequencing_protocol.json - v9.0.10] - 2019-02-01

Fixed

Fixed examples that were separated by comma instead of semi-colon. Fixes #784

[type/file/image_file.json - v1.0.3] - 2019-02-01

Fixed

Fixed incorrect name field value identified by linter. Fixes #776

[module/process/sequencing/plate_based_sequencing.json - v1.0.5] - 2019-02-01

Fixed

Fixed incorrect describedBy field pattern identified by linter. Fixes #776

[type/biomaterial/cell_suspension.json - v8.7.2] - 2019-02-01

Fixed

Fixed incorrect describedBy field pattern identified by linter. Fixes #776

[module/ontology/cell_cycle_ontology.json - v5.3.4] - 2019-02-01

Fixed

Fixed missing description field in describedBy property. Fixes #780

[module/ontology/cell_type_ontology.json - v5.3.4] - 2019-02-01

Fixed

Fixed missing description field in describedBy property. Fixes #780

[module/ontology/development_stage_ontology.json - v5.3.4] - 2019-02-01

Fixed

Fixed missing description field in describedBy property. Fixes #780

[module/ontology/disease_ontology.json - v5.3.5] - 2019-02-01

Fixed

Fixed missing description field in describedBy property. Fixes #780

[module/ontology/ethnicity_ontology.json - v5.3.6] - 2019-02-01

Fixed

Fixed missing description field in describedBy property. Fixes #780

[module/ontology/instrument_ontology.json - v5.3.4] - 2019-02-01

Fixed

Fixed missing description field in describedBy property. Fixes #780

[module/ontology/microscopy_ontology.json - v1.0.3] - 2019-02-01

Fixed

Fixed missing description field in describedBy property. Fixes #780

[type/biomaterial/cell_line.json - v10.0.1] - 2019-02-01

Fixed

Fixed missing description field in describedBy property. Fixes #780

[type/biomaterial/cell_suspension.json - v8.7.1] - 2019-02-01

Fixed

Fixed missing description field in describedBy property. Fixes #780

[type/biomaterial/donor_organism.json - v14.0.1] - 2019-02-01

Fixed

Fixed missing description field in describedBy property. Fixes #780

[type/biomaterial/specimen_from_organism.json - v7.0.1] - 2019-02-01

Fixed

Fixed missing description field in describedBy property. Fixes #780

[module/biomaterial/human_specific.json - v1.0.8] - 2019-02-01

Fixed

Fixed missing description field in describedBy property. Fixes #780

[type/protocol/sequencing/sequencing_protocol.json - v9.0.9] - 2019-02-01

Fixed

Fixed missing description field in describedBy property. Fixes #780

[type/protocol/imaging/imaging_protocol.json - v11.0.6] - 2019-02-01

Fixed

Fixed missing description field in describedBy property. Fixes #780

[type/file/analysis_file.json - v5.3.6] - 2019-02-01

Fixed

Fixed missing user_friendly field in file_core. Fixes #778.

[type/protocol/protocol.json - v6.3.8] - 2019-02-01

Fixed

Fixed missing user_friendly field in protocol_core. Fixes 778

[type/process/analysis/analysis_process.json - v8.0.7] - 2019-02-01

Fixed

Fixed missing user_friendly field in file_core. Fixes #778.

[type/biomaterial/cell_suspension.json - v8.7.0] - 2019-02-01

Added

Added timecourse field to schema. Fixes #755.

[type/biomaterial/donor_organism.json - v14.0.0] - 2019-01-31

Changed

Changed familial_relationship to be plural. Fixes #768.

[type/project/project.json - v11.0.0] - 2019-01-30

Change

Change accession fields to arrays. Changed field names to adhere to Style Guide. Fixes #324.

[type/biomaterial/cell_line.json - v10.0.0] - 2019-01-30

Added

Added required model_organ field to cell line schema. Fixes #606.

[type/biomaterial/organoid.json - v10.0.0] - 2019-01-30

Removed

Removed organoid_type field. Fixes #736.

[type/protocol/biomaterial_collection/aggregate_generation_protocol.json - v2.0.0] - 2019-01-30

Update

Update field names/descriptions. Fixes #746.

[module/biomaterial/preservation_storage.json - v6.0.0] - 2019-01-22

Change

Change enum list to remove commas from values. Fixes #743.

[type/biomaterial/specimen_from_organism.json - v7.0.0] - 2019-01-22

Change

Change enum list to remove commas from values. Fixes #743.

[type/protocol/imaging/imaging_preparation_protocol.json - v2.0.0] - 2019-01-22

Change

Change enum list to remove commas from values. Fixes #743.

[module/project/funder.json - v2.0.0] - 2019-01-22

Changed

Changed grant_id and funder_name to be required. Fixes #731.

[type/project/project.json - v10.0.0] - 2019-01-22

Changed

Changed funders to be required. Fixes #731.

[module/biomaterial/timecourse.json - v2.0.0] - 2019-01-18

Changed

Changed fields to remove timecourse_. Fixes #745.

[type/biomaterial/donor_organism.json - v13.0.0] - 2019-01-18

Changed

Changed fields to remove timecourse_. Fixes #745.

[type/biomaterial/organoid.json - v9.0.0] - 2019-01-16

Updated

Updated field names to remove organoid_ prefix. Fixes #480.

[module/process/sequencing/10x.json - v1.0.5] - 2019-01-15

Added

Added second example for fastq creation method and fastq creation method version.Fixes #723

[type/protocol/sequencing/sequencing_protocol.json - v9.0.8] - 2019-01-15

Added

Added second example for fastq creation method and fastq creation method version.Fixes #723

[type/biomaterial/donor_organism.json - v12.0.5] - 2019-01-14

Update

Update examples to be separated by semicolon instead of comma. Fixes #728.

[core/project/project_core.json - v7.0.5] - 2019-01-14

Update

Update field examples/descriptions for grammar. Fixes #729.

[type/project/project.json - v9.0.8] - 2019-01-14

Update

Update field examples/descriptions for grammar. Fixes #729.

[type/biomaterial/organoid.json - v8.3.12] - 2019-01-14

Fixed

Fixed typo in field user_friendly in property organoid_morphology. Fixes #726

[type/protocol/sequencing/sequencing_protocol.json - v9.0.7] - 2019-01-14

Fixed

Fixed typo in field user_friendly in property protocol_core. Fixes #726

[module/biomaterial/cell_morphology.json - v6.1.5] - 2019-01-09

Update

Update examples, description, user-friendly names, and guideslines. Fixes #690.

[module/biomaterial/death.json - v5.4.1] - 2019-01-09

Update

Update examples, description, user-friendly names, and guideslines. Fixes #690.

[module/biomaterial/familial_relationship.json - v6.0.3] - 2019-01-09

Update

Update examples, description, user-friendly names, and guideslines. Fixes #690.

[module/biomaterial/growth_conditions.json - v6.4.2] - 2019-01-09

Update

Update examples, description, user-friendly names, and guideslines. Fixes #690.

[module/biomaterial/human_specific.json - v1.0.7] - 2019-01-09

Update

Update examples, description, user-friendly names, and guideslines. Fixes #690.

[module/biomaterial/medical_history.json - v5.2.5] - 2019-01-09

Update

Update examples, description, user-friendly names, and guideslines. Fixes #690.

[module/biomaterial/mouse_specific.json - v1.0.6] - 2019-01-09

Update

Update examples, description, user-friendly names, and guideslines. Fixes #690.

[module/biomaterial/preservation_storage.json - v5.3.5] - 2019-01-09

Update

Update examples, description, user-friendly names, and guideslines. Fixes #690.

[module/biomaterial/state_of_specimen.json - v5.2.7] - 2019-01-09

Update

Update examples, description, user-friendly names, and guideslines. Fixes #690.

[type/biomaterial/cell_line.json - v9.0.5] - 2019-01-09

Update

Update examples, description, user-friendly names, and guideslines. Fixes #690.

[type/biomaterial/cell_suspension.json - v8.6.6] - 2019-01-09

Update

Update examples, description, user-friendly names, and guideslines. Fixes #690.

[type/biomaterial/donor_organism.json - v12.0.4] - 2019-01-09

Update

Update examples, description, user-friendly names, and guideslines. Fixes #690.

[type/biomaterial/specimen_from_organism.json - v6.3.8] - 2019-01-09

Update

Update examples, description, user-friendly names, and guideslines. Fixes #690.

[type/protocol/imaging/imaging_preparation_protocol.json - v1.0.4] - 2019-01-09

Update

Update examples, description, user-friendly names, and guideslines. Fixes #690.

[module/biomaterial/timecourse.json - v1.1.5] - 2019-01-09

Fixed

Fixed bug in spelling of user_friendly field in timecourse module. Fixes #710

[type/biomaterial/donor_organism.json - v12.0.3] - 2019-01-09

Fixed

Fixed bug in spelling of user_friendly field in timecourse module. Fixes #710

[core/biomaterial/biomaterial_core.json - v7.0.4] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[core/file/file_core.json - v5.2.5] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[core/process/process_core.json - v9.0.3] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[core/project/project_core.json - v7.0.4] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[core/protocol/protocol_core.json - v5.2.5] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/biomaterial/cell_suspension.json - v8.6.5] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/biomaterial/organoid.json - v8.3.11] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/biomaterial/cell_line.json - v9.0.4] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/biomaterial/imaged_specimen.json - v2.0.4] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/biomaterial/donor_organism.json - v12.0.2] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/biomaterial/specimen_from_organism.json - v6.3.7] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/file/supplementary_file.json - v1.1.7] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/file/image_file.json - v1.0.2] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/file/sequence_file.json - v7.0.2] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/process/analysis/analysis_process.json - v8.0.6] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/file/analysis_file.json - v5.3.5] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/file/reference_file.json - v2.2.8] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/process/process.json - v6.0.6] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/project/project.json - v9.0.7] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/protocol/imaging/imaging_protocol.json - v11.0.5] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/protocol/biomaterial_collection/aggregate_generation_protocol.json - v1.1.7] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/protocol/biomaterial_collection/collection_protocol.json - v8.2.10] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/protocol/biomaterial_collection/dissociation_protocol.json - v5.0.7] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/protocol/sequencing/library_preparation_protocol.json - v4.4.4] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/protocol/protocol.json - v6.3.7] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/protocol/biomaterial_collection/enrichment_protocol.json - v2.2.8] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/protocol/imaging/imaging_preparation_protocol.json - v1.0.3] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/protocol/biomaterial_collection/ipsc_induction_protocol.json - v2.0.4] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/protocol/analysis/analysis_protocol.json - v8.0.6] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/protocol/biomaterial_collection/differentiation_protocol.json - v1.3.3] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/protocol/sequencing/sequencing_protocol.json - v9.0.6] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #703.

[type/protocol/sequencing/sequencing_protocol.json - v9.0.5] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #685.

[module/ontology/biological_macromolecule_ontology.json - v5.3.3] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/cell_cycle_ontology.json - v5.3.3] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/cell_type_ontology.json - v5.3.3] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/cellular_component_ontology.json - v1.0.3] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/development_stage_ontology.json - v5.3.3] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/disease_ontology.json - v5.3.4] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/enrichment_ontology.json - v1.2.4] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/ethnicity_ontology.json - v5.3.5] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/instrument_ontology.json - v5.3.3] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/length_unit_ontology.json - v5.3.3] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/library_amplification_ontology.json - v1.2.3] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/library_construction_ontology.json - v1.2.3] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/mass_unit_ontology.json - v5.3.3] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/microscopy_ontology.json - v1.0.2] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/organ_ontology.json - v5.3.6] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/organ_part_ontology.json - v5.3.3] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/process_type_ontology.json - v5.3.3] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/protocol_type_ontology.json - v5.3.3] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/sequencing_ontology.json - v1.1.3] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/species_ontology.json - v5.3.3] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/strain_ontology.json - v5.3.4] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/ontology/time_unit_ontology.json - v5.3.3] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[type/protocol/sequencing/library_preparation_protocol.json - v4.4.3] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[type/biomaterial/cell_line.json - v9.0.3] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[type/biomaterial/cell_suspension.json - v8.6.4] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/protocol/target.json - v1.0.3] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[type/protocol/imaging/imaging_protocol.json - v11.0.4] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[type/biomaterial/donor_organism.json - v12.0.1] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[type/biomaterial/specimen_from_organism.json - v6.3.6] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/biomaterial/human_specific.json - v1.0.6] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[type/protocol/sequencing/sequencing_protocol.json - v9.0.5] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/biomaterial/cell_morphology.json - v6.1.4] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[type/biomaterial/organoid.json - v8.3.10] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[type/biomaterial/imaged_specimen.json - v2.0.3] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[type/protocol/protocol.json - v6.3.6] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[type/protocol/biomaterial_collection/enrichment_protocol.json - v2.2.7] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[type/protocol/analysis/analysis_protocol.json - v8.0.5] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[type/process/process.json - v6.0.5] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[type/protocol/biomaterial_collection/dissociation_protocol.json - v5.0.6] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[type/process/analysis/analysis_process.json - v8.0.5] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[type/protocol/biomaterial_collection/collection_protocol.json - v8.2.9] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[type/file/reference_file.json - v2.2.7] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/biomaterial/mouse_specific.json - v1.0.5] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/biomaterial/timecourse.json - v1.1.4] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[module/biomaterial/preservation_storage.json - v5.3.4] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[type/protocol/imaging/imaging_preparation_protocol.json - v1.0.2] - 2019-01-09

Add

Add examples and user-friendly names. Fixes #613.

[type/file/reference_file.json - v2.2.6] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #674.

[type/process/process.json - v6.0.4] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #697.

[module/process/purchased_reagents.json - v6.0.4] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #699.

[module/process/sequencing/10x.json - v1.0.4] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #699.

[module/process/sequencing/barcode.json - v5.2.5] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #699.

[module/process/sequencing/insdc_experiment.json - v1.1.5] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #699.

[module/process/sequencing/plate_based_sequencing.json - v1.0.4] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #699.

[type/protocol/biomaterial_collection/collection_protocol.json - v8.2.8] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #699.

[type/biomaterial/specimen_from_organism.json - v6.3.5] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #699.

[type/protocol/biomaterial_collection/differentiation_protocol.json - v1.3.2] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #699.

[module/protocol/target.json - v1.0.2] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #699.

[type/protocol/imaging/imaging_protocol.json - v11.0.3] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #699.

[type/protocol/sequencing/library_preparation_protocol.json - v4.4.2] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #699.

[type/protocol/biomaterial_collection/dissociation_protocol.json - v5.0.5] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #699.

[type/protocol/biomaterial_collection/ipsc_induction_protocol.json - v2.0.3] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #699.

[type/protocol/sequencing/sequencing_protocol.json - v9.0.4] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #699.

[type/process/process.json - v6.0.3] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #699.

[type/biomaterial/cell_suspension.json - v8.6.3] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #699.

[type/protocol/imaging/imaging_protocol.json - v11.0.2] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #706.

[type/process/analysis/analysis_process.json - v8.0.4] - 2019-01-09

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #679.

[type/file/supplementary_file.json - v1.1.6] - 2019-01-08

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #680.

[type/protocol/analysis/analysis_protocol.json - v8.0.4] - 2019-01-08

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #678.

[module/project/funder.json - v1.0.4] - 2019-01-08

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #701.

[module/project/publication.json - v5.2.5] - 2019-01-08

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #701.

[type/project/project.json - v9.0.6] - 2019-01-08

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #701.

[type/biomaterial/cell_line.json - v9.0.2] - 2019-01-08

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #701.

[type/protocol/sequencing/library_preparation_protocol.json - v4.4.1] - 2019-01-07

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #683.

[type/project/project.json - v9.0.5] - 2019-01-03

Added

Added user-friendly name, examples, and guidelines to adhere to Style Guide

[type/protocol/biomaterial_collection/aggregate_generation_protocol.json - v1.1.6] - 2018-12-18

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #687.

[type/protocol/biomaterial_collection/collection_protocol.json - v8.2.7] - 2018-12-18

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #687.

[type/protocol/biomaterial_collection/differentiation_protocol.json - v1.3.1] - 2018-12-18

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #687.

[type/protocol/biomaterial_collection/dissociation_protocol.json - v5.0.4] - 2018-12-18

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #687.

[type/protocol/biomaterial_collection/enrichment_protocol.json - v2.2.6] - 2018-12-18

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #687.

[type/protocol/biomaterial_collection/ipsc_induction_protocol.json - v2.0.2] - 2018-12-18

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #687.

[type/biomaterial/donor_organism.json - v12.0.0] - 2018-12-13

Changed

Changed donor_organism to make development_stage required. Fixes #607

[type/biomaterial/donor_organism.json - v11.0.0] - 2018-12-13

Removed

Removed normothermic_regional_perfusion. Fixes #590.

[module/biomaterial/death.json - v5.4.0] - 2018-12-13

Added

Added normothermic_regional_perfusion. Fixes #590.

[type/file/sequence_file.json - v7.0.1] - 2018-12-13

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #672.

[system/license.json - v1.0.0] - 2018-12-07

Added

Added system entity to capture license under which data are released. Fixes #338.

[module/protocol/target.json - v1.0.1] - 2018-12-07

Changed

Changed molecule_ID to lower case in target.json Fixes #666

[type/protocol/imaging/imaging_protocol.json - v11.0.1] - 2018-12-07

Changed

Changed molecule_ID to lower case in target.json Fixes #666

[type/biomaterial/imaged_specimen.json - v2.0.2] - 2018-12-07

Removed

Removed extra example and fixed field name to match Style Guide. Fixes #668

[type/biomaterial/donor_organism.json - v10.2.1] - 2018-12-07

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #650.

[module/project/contact.json - v6.1.4] - 2018-12-07

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #662.

[type/project/project.json - v9.0.4] - 2018-12-07

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #662.

[type/biomaterial/specimen_from_organism.json - v6.3.4] - 2018-12-07

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #653.

[type/biomaterial/organoid.json - v8.3.9] - 2018-12-07

Changed

Changed description, user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #652.

[type/biomaterial/imaged_specimen.json - v2.0.1] - 2018-12-05

Added

Added user-friendly name for biomaterial_core. Fixes #656

[module/protocol/target.json - v1.0.0] - 2018-12-05

Added

Added new schema target.json to replace deprecated imaging_target.json. Fixes #641

[type/protocol/imaging/imaging_protocol.json - v11.0.0] - 2018-12-05

Added

Added new schema target.json to replace deprecated imaging_target.json. Fixes #641

[type/protocol/sequencing/library_preparation_protocol.json - v4.4.0] - 2018-12-05

Added

Added new optional fields nominal_length and nominal_sdev. Fixes #594.

[type/file/sequence_file.json - v7.0.0] - 2018-12-05

Changed

Changed technical_replicate_group_id to library_preparation_id. Fixes #262.

[type/biomaterial/cell_suspension.json - v8.6.2] - 2018-12-05

Changed

Changed user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #620.

[type/biomaterial/cell_line.json - v9.0.1] - 2018-12-05

Changed

Changed user-friendly, example, and guidelines attributes to adhere to Style Guide. Fixes #612.

[type/biomaterial/imaged_specimen.json - v2.0.0] - 2018-12-03

Changed

Changed field names and updated examples in imaged_specimen to match the Style Guide

[module/protocol/imaging_target.json - v3.0.0] - 2018-11-28

Changed

Changed channel_id from string to array

[type/protocol/imaging/imaging_protocol.json - v10.0.0] - 2018-11-28

Changed

Changed channel_id from string to array

[module/protocol/channel.json - v2.0.0] - 2018-11-28

Changed

Changed name of the required field channel_name to channel_id

[type/protocol/imaging/imaging_protocol.json - v9.0.0] - 2018-11-28

Changed

Changed name of the required field channel_name to channel_id

[type/biomaterial/donor_organism.json - v10.2.0] - 2018-11-28

Added

Added optional field timecourse.

[system/links.json - v1.1.4] - 2018-11-27

Fixed

Fixed a bug in the links schema still referencing core instead of system

[module/protocol/imaging_target.json - v2.0.0] - 2018-11-21

Changed

Changed channel field type to array

[type/protocol/imaging/imaging_protocol.json - v9.0.0] - 2018-11-21

Changed

Changed channel field type to array

[module/protocol/imaging_target.json - v1.1.0] - 2018-11-19

Changed

Changed channel field to optional

[type/protocol/imaging/imaging_protocol.json - v8.1.0] - 2018-11-19

Changed

Changed channel field to optional

[type/protocol/sequencing/sequencing_protocol.json - v9.0.3] - 2018-10-17

Changed

Changed description for paired_end. Fixes #592.

[type/protocol/imaging/imaging_protocol.json - v8.0.3] - 2018-10-11

Removed

Removed required field protocol_type from imaging_protocol (not actually in the schema). Fixes #572.

[module/ontology/organ_ontology.json - v5.3.5] - 2018-09-25

Fixed

Fixed issue with organ ontology assignment by using less stringent term restriction. Fixes #567.

[type/biomaterial/specimen_from_organism.json - v6.3.3] - 2018-09-25

Fixed

Fixed issue with organ ontology assignment by using less stringent term restriction. Fixes #567.

[type/biomaterial/organoid.json - v8.3.8] - 2018-09-25

Fixed

Fixed issue with organ ontology assignment by using less stringent term restriction. Fixes #567.

[type/biomaterial/donor_organism.json - v10.1.2] - 2018-09-24

Updated

Updated user-friendly term for is_living.

[type/protocol/sequencing/library_preparation_protocol.json - v4.3.3] - 2018-09-21

Added

Added 'not provided' to enum for strand field. Fixes #544.

[type/biomaterial/cell_line.json - v9.0.0] - 2018-09-21

Made

Made publication a single object instead of an array of objects. Fixes #557

[type/project/project.json - v9.0.3] - 2018-09-21

Fixed

Fixed missing required field project_core

[module/ontology/organ_ontology.json - v5.3.4] - 2018-09-18

Fixed

Fixed organ validation issue by including embryo and children as allowed values

[type/biomaterial/organoid.json - v8.3.7] - 2018-09-18

Fixed

Fixed organ validation issue by including embryo and children as allowed values

[type/biomaterial/specimen_from_organism.json - v6.3.2] - 2018-09-18

Fixed

Fixed organ validation issue by including embryo and children as allowed values

[type/file/supplementary_file.json - v1.1.5] - 2018-09-04

Added

Added missing provenance field

[module/ontology/cellular_component_ontology.json - v1.0.2] - 2018-09-04

Fixed

Fixed name/title mix-up bug

[module/ontology/microscopy_ontology.json - v1.0.1] - 2018-09-04

Fixed

Fixed name/title mix-up bug

[type/file/supplementary_file.json - v1.1.4] - 2018-09-04

Fixed

Fixed name/title mix-up bug

[module/protocol/imaging_target.json - v1.0.2] - 2018-09-04

Fixed

Fixed name/title mix-up bug

[type/protocol/imaging/imaging_protocol.json - v8.0.2] - 2018-09-04

Fixed

Fixed name/title mix-up bug

[module/ontology/cellular_component_ontology.json - v1.0.1] - 2018-08-31

Updated

Updated schema to json-schema draft-07

[module/protocol/channel.json - v1.0.1] - 2018-08-31

Updated

Updated schema to json-schema draft-07

[module/protocol/imaging_target.json - v1.0.1] - 2018-08-31

Updated

Updated schema to json-schema draft-07

[type/biomaterial/imaged_specimen.json - v1.0.1] - 2018-08-31

Updated

Updated schema to json-schema draft-07

[type/file/image_file.json - v1.0.1] - 2018-08-31

Updated

Updated schema to json-schema draft-07

[type/protocol/imaging/imaging_preparation_protocol.json - v1.0.1] - 2018-08-31

Updated

Updated schema to json-schema draft-07

[type/protocol/imaging/imaging_protocol.json - v8.0.1] - 2018-08-31

Updated

Updated schema to json-schema draft-07

[module/ontology/cellular_component_ontology.json - v1.0.0] - 2018-08-31

Added

Added new schema

[module/ontology/microscopy_ontology.json - v1.0.0] - 2018-08-31

Added

Added new schema

[module/protocol/imaging_target.json - v1.0.0] - 2018-08-31

Added

Added new schema

[module/protocol/channel.json - v1.0.0] - 2018-08-31

Added

Added new schema

[type/biomaterial/imaged_specimen.json - v1.0.0] - 2018-08-31

Added

Added new schema

[type/file/image_file.json - v1.0.0] - 2018-08-31

Added

Added new schema

[type/protocol/imaging/imaging_preparation_protocol.json - v1.0.0] - 2018-08-31

Added

Added new schema

[type/protocol/imaging/imaging_protocol.json - v8.0.0] - 2018-08-31

Added

Added several new fields including new required fields to address imaging use cases

[type/protocol/biomaterial_collection/differentiation_protocol.json - v1.3.0] - 2018-08-31

Removed

Removed differentiation from 7 fields. Fixes #517

[type/protocol/analysis/analysis_protocol.json - v8.0.3] - 2018-08-31

Added

Added user-friendly name to some properties

[type/process/analysis/analysis_process.json - v8.0.3] - 2018-08-31

Added

Added user-friendly name to some properties

[core/biomaterial/biomaterial_core.json - v7.0.3] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[core/file/file_core.json - v5.2.4] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[core/process/process_core.json - v9.0.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[core/project/project_core.json - v7.0.3] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[core/protocol/protocol_core.json - v5.2.4] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/biomaterial/cell_morphology.json - v6.1.3] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/biomaterial/death.json - v5.3.3] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/biomaterial/familial_relationship.json - v6.0.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/biomaterial/growth_conditions.json - v6.4.1] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/biomaterial/human_specific.json - v1.0.5] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/biomaterial/medical_history.json - v5.2.4] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/biomaterial/mouse_specific.json - v1.0.4] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/biomaterial/preservation_storage.json - v5.3.3] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/biomaterial/state_of_specimen.json - v5.2.6] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/biomaterial/timecourse.json - v1.1.3] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/ontology/biological_macromolecule_ontology.json - v5.3.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/ontology/cell_cycle_ontology.json - v5.3.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/ontology/cell_type_ontology.json - v5.3.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/ontology/development_stage_ontology.json - v5.3.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/ontology/disease_ontology.json - v5.3.3] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/ontology/enrichment_ontology.json - v1.2.3] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/ontology/ethnicity_ontology.json - v5.3.4] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/ontology/instrument_ontology.json - v5.3.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/ontology/length_unit_ontology.json - v5.3.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/ontology/library_amplification_ontology.json - v1.2.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/ontology/library_construction_ontology.json - v1.2.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/ontology/mass_unit_ontology.json - v5.3.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/ontology/organ_ontology.json - v5.3.3] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/ontology/organ_part_ontology.json - v5.3.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/ontology/process_type_ontology.json - v5.3.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/ontology/protocol_type_ontology.json - v5.3.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/ontology/sequencing_ontology.json - v1.1.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/ontology/species_ontology.json - v5.3.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/ontology/strain_ontology.json - v5.3.3] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/ontology/time_unit_ontology.json - v5.3.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/process/purchased_reagents.json - v6.0.3] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/process/sequencing/10x.json - v1.0.3] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/process/sequencing/barcode.json - v5.2.4] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/process/sequencing/insdc_experiment.json - v1.1.4] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/process/sequencing/plate_based_sequencing.json - v1.0.3] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/project/contact.json - v6.1.3] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/project/funder.json - v1.0.3] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[module/project/publication.json - v5.2.4] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[system/links.json - v1.1.3] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[system/provenance.json - v1.0.3] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/biomaterial/cell_line.json - v8.6.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/biomaterial/cell_suspension.json - v8.6.1] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/biomaterial/donor_organism.json - v10.1.1] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/biomaterial/organoid.json - v8.3.6] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/biomaterial/specimen_from_organism.json - v6.3.1] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/file/analysis_file.json - v5.3.4] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/file/reference_file.json - v2.2.5] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/file/sequence_file.json - v6.5.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/file/supplementary_file.json - v1.1.3] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/process/analysis/analysis_process.json - v8.0.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/process/process.json - v6.0.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/project/project.json - v9.0.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/protocol/analysis/analysis_protocol.json - v8.0.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/protocol/biomaterial_collection/aggregate_generation_protocol.json - v1.1.5] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/protocol/biomaterial_collection/collection_protocol.json - v8.2.6] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/protocol/biomaterial_collection/differentiation_protocol.json - v1.2.6] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/protocol/biomaterial_collection/dissociation_protocol.json - v5.0.3] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/protocol/biomaterial_collection/enrichment_protocol.json - v2.2.5] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/protocol/biomaterial_collection/ipsc_induction_protocol.json - v2.0.1] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/protocol/imaging/imaging_protocol.json - v7.2.4] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/protocol/protocol.json - v6.3.5] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/protocol/sequencing/library_preparation_protocol.json - v4.3.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/protocol/sequencing/sequencing_protocol.json - v9.0.2] - 2018-08-31

Added

Added schema name. Updated schema title. Fixes #501

[type/biomaterial/donor_organism.json - v10.1.0] - 2018-08-28

Changed

Changed optional field disease to diseases

[type/biomaterial/specimen_from_organism.json - v6.3.0] - 2018-08-28

Changed

Changed optional field disease to diseases

[module/ontology/disease_ontology.json - v5.3.2] - 2018-08-21

Fixed

Fixed schema validation by setting include_self to true

[module/ontology/organ_ontology.json - v5.3.2] - 2018-08-21

Fixed

Fixed schema validation by setting include_self to true

[module/ontology/strain_ontology.json - v5.3.2] - 2018-08-21

Fixed

Fixed schema validation by setting include_self to true

[module/ontology/ethnicity_ontology.json - v5.3.3] - 2018-08-21

Fixed

Fixed schema validation by correcting a casing issue

[type/biomaterial/donor_organism.json - v10.0.3] - 2018-08-21

Fixed

Fixed schema validation by setting include_self to true

[type/biomaterial/cell_line.json - v8.6.1] - 2018-08-21

Fixed

Fixed schema validation by setting include_self to true

[type/biomaterial/specimen_from_organism.json - v6.2.9] - 2018-08-21

Fixed

Fixed schema validation by setting include_self to true

[type/biomaterial/organoid.json - v8.3.5] - 2018-08-21

Fixed

Fixed schema validation by setting include_self to true

[module/biomaterial/mouse_specific.json - v1.0.3] - 2018-08-21

Fixed

Fixed schema validation by setting include_self to true

[module/biomaterial/human_specific.json - v1.0.4] - 2018-08-21

Fixed

Fixed schema validation by correcting a casing issue

[type/protocol/biomaterial_collection/ipsc_induction_protocol.json - v2.0.0] - 2018-08-16

Changed

Changed several field names from induced_pluripotent_cell_* to ipsc_*

[module/biomaterial/growth_conditions.json - v6.4.0] - 2018-08-15

Added

Added new culture_environment field. Fixes #234.

[type/biomaterial/cell_line.json - v8.6.0] - 2018-08-15

Added

Added new culture_environment field. Fixes #234.

[type/biomaterial/cell_suspension.json - v8.6.0] - 2018-08-15

Added

Added new culture_environment field. Fixes #234.

[type/biomaterial/cell_line.json - v8.4.2] - 2018-08-15

Added

Added stem cell to cell line type enum. Fixes #498.

[module/ontology/ethnicity_ontology.json - v5.3.2] - 2018-08-10

Fixed

Fixed the ontology reference to work with the new hancestro

[type/biomaterial/donor_organism.json - v10.0.2] - 2018-08-10

Fixed

Fixed the ontology reference to work with the new hancestro

[module/biomaterial/human_specific.json - v1.0.3] - 2018-08-10

Fixed

Fixed the ontology reference to work with the new hancestro

[core/biomaterial/biomaterial_core.json - v7.0.2] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[core/file/file_core.json - v5.2.3] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[core/process/process_core.json - v9.0.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[core/project/project_core.json - v7.0.2] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[core/protocol/protocol_core.json - v5.2.3] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/biomaterial/cell_morphology.json - v6.1.2] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/biomaterial/death.json - v5.3.2] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/biomaterial/familial_relationship.json - v6.0.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/biomaterial/growth_conditions.json - v6.2.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/biomaterial/human_specific.json - v1.0.2] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/biomaterial/medical_history.json - v5.2.3] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/biomaterial/mouse_specific.json - v1.0.2] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/biomaterial/preservation_storage.json - v5.3.2] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/biomaterial/state_of_specimen.json - v5.2.5] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/biomaterial/timecourse.json - v1.1.2] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/ontology/biological_macromolecule_ontology.json - v5.3.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/ontology/cell_cycle_ontology.json - v5.3.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/ontology/cell_type_ontology.json - v5.3.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/ontology/development_stage_ontology.json - v5.3.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/ontology/disease_ontology.json - v5.3.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/ontology/enrichment_ontology.json - v1.2.2] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/ontology/ethnicity_ontology.json - v5.3.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/ontology/instrument_ontology.json - v5.3.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/ontology/length_unit_ontology.json - v5.3.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/ontology/library_amplification_ontology.json - v1.2.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/ontology/library_construction_ontology.json - v1.2.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/ontology/mass_unit_ontology.json - v5.3.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/ontology/organ_ontology.json - v5.3.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/ontology/organ_part_ontology.json - v5.3.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/ontology/process_type_ontology.json - v5.3.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/ontology/protocol_type_ontology.json - v5.3.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/ontology/sequencing_ontology.json - v1.1.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/ontology/species_ontology.json - v5.3.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/ontology/strain_ontology.json - v5.3.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/ontology/time_unit_ontology.json - v5.3.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/process/sequencing/10x.json - v1.0.2] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/process/sequencing/barcode.json - v5.2.3] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/process/sequencing/insdc_experiment.json - v1.1.3] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/process/sequencing/plate_based_sequencing.json - v1.0.2] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/process/purchased_reagents.json - v6.0.2] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/project/contact.json - v6.1.2] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/project/funder.json - v1.0.2] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[module/project/publication.json - v5.2.3] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[system/links.json - v1.1.2] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[system/provenance.json - v1.0.2] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/biomaterial/cell_line.json - v8.4.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/biomaterial/cell_suspension.json - v8.4.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/biomaterial/donor_organism.json - v10.0.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/biomaterial/organoid.json - v8.3.4] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/biomaterial/specimen_from_organism.json - v6.2.8] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/file/analysis_file.json - v5.3.3] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/file/reference_file.json - v2.2.4] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/file/sequence_file.json - v6.5.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/file/supplementary_file.json - v1.1.2] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/process/analysis/analysis_process.json - v8.0.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/process/process.json - v6.0.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/project/project.json - v9.0.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/protocol/protocol.json - v6.3.4] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/protocol/analysis/analysis_protocol.json - v8.0.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/protocol/biomaterial_collection/aggregate_generation_protocol.json - v1.1.4] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/protocol/biomaterial_collection/collection_protocol.json - v8.2.5] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/protocol/biomaterial_collection/differentiation_protocol.json - v1.2.5] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/protocol/biomaterial_collection/dissociation_protocol.json - v5.0.2] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/protocol/biomaterial_collection/enrichment_protocol.json - v2.2.4] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/protocol/biomaterial_collection/ipsc_induction_protocol.json - v1.2.5] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/protocol/imaging/imaging_protocol.json - v7.2.3] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/protocol/sequencing/library_preparation_protocol.json - v4.3.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/protocol/sequencing/sequencing_protocol.json - v9.0.1] - 2018-08-10

Changed

Changed from json-schema draft-4 to draft-07

[type/project/project.json - v9.0.0] - 2018-08-09

Changed

Changed supplementary_files to supplementary_links.

[type/file/sequence_file.json - v6.5.0] - 2018-08-07

Removed

Removed deprecated smartseq2 field that was accidentally re-added.

[type/file/sequence_file.json - v6.4.0] - 2018-08-06

Added

Added optional field technical_replicate_group fixes #421

[type/protocol/sequencing/sequencing_protocol.json - v9.0.0] - 2018-08-03

Changed

Changed paired_ends to paired_end. Fixes #467.

[type/protocol/sequencing/sequencing_protocol.json - v8.1.3] - 2018-08-03

Changed

Changed sequencing_approach friendly name to Sequencing approach. Fixes #469.

[type/biomaterial/donor_organism.json - v10.0.0] - 2018-08-03

Changed

Changed biological_sex to sex. Fixes #384.

[core/process/process_core.json - v9.0.0] - 2018-08-01

Changed

Changed operator_identity to operator. Fixes #377.

[type/process/process.json - v6.0.0] - 2018-08-01

Changed

Changed operator_identity to operator. Fixes #377.

[type/process/analysis/analysis_process.json - v8.0.0] - 2018-08-01

Changed

Changed operator_identity to operator. Fixes #377.

[module/biomaterial/familial_relationship.json - v6.0.0] - 2018-07-31

Changed

Changed is_parent_of to child, is_child_of to parent, and is_sibling_of to sibling.

[type/biomaterial/donor_organism.json - v9.0.0] - 2018-07-31

Changed

Changed is_parent_of to child, is_child_of to parent, and is_sibling_of to sibling.

[module/process/sequencing/10x.json - v1.0.1] - 2018-07-26

Fixes

Fixes 10x url bug

[type/protocol/sequencing/sequencing_protocol.json - v8.1.2] - 2018-07-26

Fixes

Fixes 10x url bug

[type/protocol/biomaterial_collection/dissociation_protocol.json - v5.0.1] - 2018-07-26

Removed

Removed requirement for non-existent field.

[type/protocol/sequencing/library_preparation_protocol.json - v4.3.0] - 2018-07-26

Added

Added optional nucleic_acid_source field. Fixes #385.

[type/protocol/biomaterial_collection/dissociation_protocol.json - v5.0.0] - 2018-07-26

Removed

Removed nucleic_acid_source field. Fixes #385.

[type/biomaterial/donor_organism.json - v8.2.8] - 2018-07-23

Changed

Changed descriptions, user-friendly names, and examples.

[module/biomaterial/state_of_specimen.json - v5.2.4] - 2018-07-23

Changed

Changed example.

[type/biomaterial/specimen_from_organism.json - v6.2.7] - 2018-07-23

Changed

Changed example.

[module/biomaterial/growth_conditions.json - v6.2.0] - 2018-07-23

Added

Added a new field - feeder_layer_type - to capture the type of feeder layer cells biomaterial is grown on as this may have different effects on biomaterial growth/proliferation.

[type/biomaterial/cell_line.json - v8.4.0] - 2018-07-23

Added

Added a new field - feeder_layer_type - to capture the type of feeder layer cells biomaterial is grown on as this may have different effects on biomaterial growth/proliferation.

[type/biomaterial/cell_suspension.json - v8.4.0] - 2018-07-23

Added

Added a new field - feeder_layer_type - to capture the type of feeder layer cells biomaterial is grown on as this may have different effects on biomaterial growth/proliferation.

[type/process/analysis/analysis_process.json - v6.0.0] - 2018-07-19

Added

Added schema for analysis_process as required by the analysis team

[type/protocol/analysis/analysis_protocol.json - v8.0.0] - 2018-07-19

Removed

Removed a number of fields from analysis protocol as they are more appropriate in analysis_process

[module/biomaterial/cell_morphology.json - v6.1.1] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[module/biomaterial/death.json - v5.3.1] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[module/biomaterial/growth_conditions.json - v6.1.2] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[module/biomaterial/human_specific.json - v1.0.1] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[module/biomaterial/medical_history.json - v5.2.2] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[module/biomaterial/mouse_specific.json - v1.0.1] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[module/biomaterial/preservation_storage.json - v5.3.1] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[module/biomaterial/state_of_specimen.json - v5.2.3] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[module/biomaterial/timecourse.json - v1.1.1] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[module/process/sequencing/barcode.json - v5.2.2] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[module/process/sequencing/insdc_experiment.json - v1.1.2] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[module/process/sequencing/plate_based_sequencing.json - v1.0.1] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[module/process/purchased_reagents.json - v6.0.1] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[module/project/contact.json - v6.1.1] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[module/project/funder.json - v1.0.1] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[module/project/publication.json - v5.2.2] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[system/provenance.json - v1.0.1] - 2018-07-17

Changed

Changed descriptions.

[type/biomaterial/cell_suspension.json - v8.3.3] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/cell_line.json - v8.3.3] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/donor_organism.json - v8.2.3] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/cell_suspension.json - v8.3.4] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/cell_line.json - v8.3.4] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/donor_organism.json - v8.2.4] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/donor_organism.json - v8.2.5] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/donor_organism.json - v8.2.6] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/specimen_from_organism.json - v6.2.3] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/specimen_from_organism.json - v6.2.4] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/sequencing/library_preparation_protocol.json - v4.2.3] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/process/process.json - v4.2.3] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/cell_suspension.json - v8.3.5] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/biomaterial_collection/dissociation_protocol.json - v4.2.3] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/specimen_from_organism.json - v6.2.5] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/biomaterial_collection/differentiation_protocol.json - v1.2.3] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/biomaterial_collection/ipsc_induction_protocol.json - v1.2.3] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/biomaterial_collection/collection_protocol.json - v8.2.3] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/sequencing/library_preparation_protocol.json - v4.2.4] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/project/project.json - v8.2.3] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/project/project.json - v8.2.4] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/cell_line.json - v8.3.5] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/project/project.json - v8.2.5] - 2018-07-17

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/cell_line.json - v8.3.6] - 2018-07-17

Changed

Changed descriptions.

[type/protocol/biomaterial_collection/aggregate_generation_protocol.json - v1.1.3] - 2018-07-17

Changed

Changed descriptions.

[type/protocol/sequencing/sequencing_protocol.json - v8.1.1] - 2018-07-17

Changed

Changed descriptions.

[type/protocol/protocol.json - v6.3.3] - 2018-07-17

Changed

Changed descriptions.

[type/biomaterial/donor_organism.json - v8.2.7] - 2018-07-17

Changed

Changed descriptions.

[type/protocol/biomaterial_collection/enrichment_protocol.json - v2.2.3] - 2018-07-17

Changed

Changed descriptions.

[type/protocol/biomaterial_collection/ipsc_induction_protocol.json - v1.2.4] - 2018-07-17

Changed

Changed descriptions.

[type/protocol/analysis/analysis_protocol.json - v7.2.4] - 2018-07-17

Changed

Changed descriptions.

[type/project/project.json - v8.2.6] - 2018-07-17

Changed

Changed descriptions.

[type/biomaterial/organoid.json - v8.3.3] - 2018-07-17

Changed

Changed descriptions.

[type/process/process.json - v4.2.4] - 2018-07-17

Changed

Changed descriptions.

[type/protocol/biomaterial_collection/collection_protocol.json - v8.2.4] - 2018-07-17

Changed

Changed descriptions.

[type/protocol/imaging/imaging_protocol.json - v7.2.2] - 2018-07-17

Changed

Changed descriptions.

[type/protocol/sequencing/library_preparation_protocol.json - v4.2.5] - 2018-07-17

Changed

Changed descriptions.

[type/file/reference_file.json - v2.2.3] - 2018-07-17

Changed

Changed descriptions.

[type/file/analysis_file.json - v5.3.2] - 2018-07-17

Changed

Changed descriptions.

[type/biomaterial/cell_suspension.json - v8.3.6] - 2018-07-17

Changed

Changed descriptions.

[type/protocol/biomaterial_collection/dissociation_protocol.json - v4.2.4] - 2018-07-17

Changed

Changed descriptions.

[type/file/sequence_file.json - v6.3.3] - 2018-07-17

Changed

Changed descriptions.

[type/protocol/biomaterial_collection/differentiation_protocol.json - v1.2.4] - 2018-07-17

Changed

Changed descriptions.

[type/biomaterial/specimen_from_organism.json - v6.2.6] - 2018-07-17

Changed

Changed descriptions.

[module/process/sequencing/10x.json - v1.0.0] - 2018-07-17

Added

Added module with 10x-specific fields.

[type/protocol/sequencing/sequencing_protocol.json - v8.1.0] - 2018-07-17

Added

Added reference to optional 10x module.

[type/protocol/sequencing/sequencing_protocol.json - v8.0.0] - 2018-07-17

Added

Added module with 10x-specific fields.

[core/biomaterial/biomaterial_core.json - v7.0.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[core/file/file_core.json - v5.2.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[core/process/process_core.json - v7.0.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[core/project/project_core.json - v7.0.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[core/protocol/protocol_core.json - v5.2.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/cell_line.json - v8.3.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/organoid.json - v8.3.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/cell_suspension.json - v8.3.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/donor_organism.json - v8.2.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/specimen_from_organism.json - v6.2.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/file/reference_file.json - v2.2.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/file/sequence_file.json - v6.3.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/process/process.json - v4.2.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/project/project.json - v8.2.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/protocol.json - v6.3.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/analysis/analysis_protocol.json - v7.2.3] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/biomaterial_collection/aggregate_generation_protocol.json - v1.1.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/biomaterial_collection/collection_protocol.json - v8.2.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/biomaterial_collection/differentiation_protocol.json - v1.2.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/biomaterial_collection/dissociation_protocol.json - v4.2.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/biomaterial_collection/enrichment_protocol.json - v2.2.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/biomaterial_collection/ipsc_induction_protocol.json - v1.2.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/sequencing/library_preparation_protocol.json - v4.2.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/sequencing/sequencing_protocol.json - v7.2.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/donor_organism.json - v8.2.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/cell_suspension.json - v8.3.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/specimen_from_organism.json - v6.2.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/organoid.json - v8.3.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/biomaterial/cell_line.json - v8.3.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/analysis/analysis_protocol.json - v7.2.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/file/analysis_file.json - v5.3.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/file/supplementary_file.json - v1.1.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/file/reference_file.json - v2.2.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/file/sequence_file.json - v6.3.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/process/process.json - v4.2.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/project/project.json - v8.2.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/analysis/analysis_protocol.json - v7.2.2] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/biomaterial_collection/enrichment_protocol.json - v2.2.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/protocol.json - v6.3.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/biomaterial_collection/collection_protocol.json - v8.2.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/imaging/imaging_protocol.json - v7.2.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/biomaterial_collection/ipsc_induction_protocol.json - v1.2.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/biomaterial_collection/aggregate_generation_protocol.json - v1.1.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/biomaterial_collection/differentiation_protocol.json - v1.2.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/sequencing/sequencing_protocol.json - v7.2.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/sequencing/library_preparation_protocol.json - v4.2.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[type/protocol/biomaterial_collection/dissociation_protocol.json - v4.2.1] - 2018-07-16

Changed

Changed descriptions, user-friendly names, and examples.

[module/sequencing/plate_based_sequencing.json - v1.0.0] - 2018-07-16

Added

Added module plate_based_sequencing. Fixes Issue #397

[module/sequencing/smartseq2.json - v5.2.1] - 2018-07-16

Deprecated

Deprecated module smartseq2 in favour of a more generic plate_based_sequncing module. Fixes Issue #397

[type/biomaterial/cell_suspension.json - v8.3.0] - 2018-07-16

Added

Added field plate_based_sequencing importing the module of the same name. Fixes Issue #397.

[type/file/sequence_file.json - v6.3.0] - 2018-07-16

Removed

Removed field smartseq2 as the module has been deprecated. Fixes Issue #397.

[module/project/contact.json - v6.1.0] - 2018-07-16

Added

Added new optional field corresponding_contributor to contact schema. Fixes #409.

[type/project/project.json - v8.2.0] - 2018-07-16

Added

Added new optional field corresponding_contributor to contact schema. Fixes #409.

[type/protocol/imaging/imaging_protocol.json - v7.2.0] - 2018-07-16

Added

Added optional provenance field

[type/protocol/protocol.json - v6.3.0] - 2018-07-16

Added

Added optional provenance field

[type/biomaterial/cell_line.json - v8.3.0] - 2018-07-16

Added

Added optional provenance field

[type/biomaterial/cell_suspension.json - v8.2.0] - 2018-07-16

Added

Added optional provenance field

[type/biomaterial/donor_organism.json - v8.2.0] - 2018-07-16

Added

Added optional provenance field

[type/biomaterial/organoid.json - v8.3.0] - 2018-07-16

Added

Added optional provenance field

[type/biomaterial/specimen_from_organism.json - v6.2.0] - 2018-07-16

Added

Added optional provenance field

[type/file/analysis_file.json - v5.3.0] - 2018-07-16

Added

Added optional provenance field

[type/file/reference_file.json - v2.2.0] - 2018-07-16

Added

Added optional provenance field

[type/file/sequence_file.json - v6.2.0] - 2018-07-16

Added

Added optional provenance field

[type/file/supplemental_file.json - v1.1.0] - 2018-07-16

Added

Added optional provenance field

[type/process/process.json - v4.2.0] - 2018-07-16

Added

Added optional provenance field

[type/project/project.json - v8.1.0] - 2018-07-16

Added

Added optional provenance field

[type/protocol/analysis/analysis_protocol.json - v7.2.0] - 2018-07-16

Added

Added optional provenance field

[type/protocol/biomaterial_collection/aggregate_generation_protocol.json - v1.1.0] - 2018-07-16

Added

Added optional provenance field

[type/protocol/biomaterial_collection/collection_protocol.json - v8.2.0] - 2018-07-16

Added

Added optional provenance field

[type/protocol/biomaterial_collection/differentiation_protocol.json - v1.2.0] - 2018-07-16

Added

Added optional provenance field

[type/protocol/biomaterial_collection/dissociation_protocol.json - v4.2.0] - 2018-07-16

Added

Added optional provenance field

[type/protocol/biomaterial_collection/enrichment_protocol.json - v2.2.0] - 2018-07-16

Added

Added optional provenance field

[type/protocol/biomaterial_collection/ipsc_induction_protocol.json - v1.2.0] - 2018-07-16

Added

Added optional provenance field

[type/protocol/sequencing/library_preparation_protocol.json - v4.2.0] - 2018-07-16

Added

Added optional provenance field

[type/protocol/sequencing/sequencing_protocol.json - v7.2.0] - 2018-07-16

Added

Added optional provenance field

[module/project/contact.json - v6.0.0] - 2018-07-16

Changed

Changed email to be optional. Changed institution to be required. Fixes #411.

[type/project/project.json - v8.0.0] - 2018-07-16

Changed

Changed email to be optional. Changed institution to be required. Fixes #411.

[bundle/protocol.json - v10.4.0] - 2018-07-16

Added

Added optional iPSC induction factors field to iPSC induction protocol.

[type/protocol/biomaterial_collection/ipsc_induction_protocol.json - v1.1.0] - 2018-07-16

Added

Added optional iPSC induction factors field to iPSC induction protocol.

[type/file/supplemental_file.json - v1.0.0] - 2018-07-13

Added

A new file type entity for supplemental files. Fixes #422.

[core/project/project_core.json - v7.0.0] - 2018-07-12

Changed

Changed project_shortname to project_short_name. Fixes #378.

[bundle/project.json - v7.0.0] - 2018-07-12

Changed

Changed project_shortname to project_short_name. Fixes #378.

[type/project/project.json - v7.0.0] - 2018-07-12

Changed

Changed project_shortname to project_short_name. Fixes #378.

[module/project/contact.json - v5.3.0] - 2018-07-12

Added

Added two new optional fields - project_role and orcid_id. Fixes #352.

[bundle/project.json - v6.1.0] - 2018-07-12

Added

Added two new optional fields - project_role and orcid_id. Fixes #352.

[type/project/project.json - v6.1.0] - 2018-07-12

Added

Added two new optional fields - project_role and orcid_id. Fixes #352.

[bundle/project.json - v6.0.2] - 2018-07-06

Changed

Changed descriptions and examples for fields in the project_core and project_type schemas.

Added

Added some examples to fields in the project_core and project_type schemas.

[type/project/project.json - v6.0.2] - 2018-07-06

Changed

Changed descriptions and examples for fields in the project_core and project_type schemas.

Added

Added some examples to fields in the project_core and project_type schemas.

[core/project/project_core.json - v6.0.1] - 2018-07-06

Changed

Changed descriptions and examples for fields in the project_core and project_type schemas.

Added

Added some examples to fields in the project_core and project_type schemas.

[bundle/project.json - v6.0.1] - 2018-07-06

Changed

Changed descriptions, examples, and user friendly names in the contact module.

[type/project/project.json - v6.0.1] - 2018-07-06

Changed

Changed descriptions, examples, and user friendly names in the contact module.

[module/project/contact.json - v5.2.2] - 2018-07-06

Changed

Changed descriptions, examples, and user friendly names in the contact module.

[bundle/biomaterial.json - v11.2.0] - 2018-07-06

Added

Added model_organ_part, organoid_size, organoid_size_unit, organoid_morphology, embedded_in_matrigel, organoid_growth_environment, input_aggregate_cell_count and organoid_stored_oxygen_levels optional fields. Fixes #344. Fixes #347.

Changed

Changed organoid_age description

[type/biomaterial/organoid.json - v8.2.0] - 2018-07-06

Added

Added model_organ_part, organoid_size, organoid_size_unit, organoid_morphology, embedded_in_matrigel, organoid_growth_environment, input_aggregate_cell_count and organoid_stored_oxygen_levels optional fields. Fixes #344. Fixes #347.

Changed

Changed organoid_age description

[bundle/biomaterial.json - v11.1.0] - 2018-07-06

Added

Added optional field normothermic_regional_perfusion to donor_organism. Fixes #362.

[type/biomaterial/donor_organism.json - v8.1.0] - 2018-07-06

Added

Added optional field normothermic_regional_perfusion to donor_organism. Fixes #362.

[bundle/biomaterial.json - v11.0.0] - 2018-07-06

Changed

Renamed field mus_musculus_specific to mouse_specific and updated relevant refs. Fixes #387

[type/biomaterial/donor_organism.json - v8.0.0] - 2018-07-06

Changed

Renamed field mus_musculus_specific to mouse_specific and updated relevant refs. Fixes #387

[module/biomaterial/human_specific.json - v1.0.0] - 2018-07-06

Added

Added module human_specific to replace deprecated homo_sapiens_specific. Fixes #387

[module/biomaterial/mouse_specific.json - v1.0.0] - 2018-07-06

Added

Added module mouse_specific to replace deprecated mus_musculus _specific. Fixes #387

[module/biomaterial/homo_sapiens_specific.json - v5.3.0] - 2018-07-06

Deprecated

Deprecated module homo_sapiens_specific in favour of common name module human_specific. Fixes #387

[module/biomaterial/mus_musculus_specific.json - v5.3.0] - 2018-07-06

Deprecated

Deprecated module mus_musculus_specific in favour of common name module mouse_specific. Fixes #387

[bundle/process.json - v8.1.0] - 2018-07-06

Added

Added optional fields length_of_time and length_of_time_unit to process. Fixes #400

[type/process/process.json - v4.1.0] - 2018-07-06

Added

Added optional fields length_of_time and length_of_time_unit to process. Fixes #400

[bundle/process.json - v8.0.0] - 2018-07-06

Removed

Removed length_of_time and length_of_time_unit from process_core. Fixes #400

[type/process/process.json - v4.0.0] - 2018-07-06

Removed

Removed length_of_time and length_of_time_unit from process_core. Fixes #400

[core/process/process_core.json - v7.0.0] - 2018-07-06

Removed

Removed length_of_time and length_of_time_unit from process_core. Fixes #400

[module/ontology/enrichment_ontology.json - v1.2.1] - 2018-07-06

Changed

Fixed a typo in the curie for the enrichment ontology root class.

[bundle/biomaterial.json - v10.2.1] - 2018-07-04

Fixed

Fixed typo in is_living enum from "unkown" to "unknown"

[type/biomaterial/donor_organism.json - v7.2.1] - 2018-07-04

Fixed

Fixed typo in is_living enum from "unkown" to "unknown"

[bundle/biomaterial.json - v10.2.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[bundle/process.json - v7.1.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[bundle/protocol.json - v10.3.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[bundle/reference.json - v2.1.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[core/process/process_core.json - v6.1.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/biomaterial/cell_morphology.json - v6.1.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/biomaterial/homo_sapiens_specific.json - v5.3.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/biomaterial/mus_musculus_specific.json - v5.3.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/biomaterial/preservation_storage.json - v5.3.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/biomaterial/timecourse.json - v1.1.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[type/biomaterial/cell_line.json - v8.2.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[type/biomaterial/cell_suspension.json - v8.1.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[type/biomaterial/donor_organism.json - v7.2.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[type/biomaterial/organoid.json - v8.1.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[type/biomaterial/specimen_from_organism.json - v6.1.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[type/file/reference_file.json - v2.1.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[type/process/process.json - v3.1.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[type/protocol/analysis/analysis_protocol.json - v7.1.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[type/protocol/biomaterial_collection/collection_protocol.json - v8.1.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[type/protocol/biomaterial_collection/dissociation_protocol.json - v4.1.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[type/protocol/biomaterial_collection/enrichment_protocol.json - v2.1.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[type/protocol/protocol.json - v6.2.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[type/protocol/sequencing/library_preparation_protocol.json - v4.1.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[type/protocol/sequencing/sequencing_protocol.json - v7.1.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/ontology/biological_macromolecule_ontology.json - v5.3.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/ontology/cell_cycle_ontology.json - v5.3.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/ontology/cell_type_ontology.json - v5.3.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/ontology/development_stage_ontology.json - v5.3.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/ontology/disease_ontology.json - v5.3.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/ontology/enrichment_ontology.json - v1.2.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/ontology/ethnicity_ontology.json - v5.3.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/ontology/instrument_ontology.json - v5.3.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/ontology/length_unit_ontology.json - v5.3.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/ontology/library_amplification_ontology.json - v1.2.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/ontology/library_construction_ontology.json - v1.2.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/ontology/mass_unit_ontology.json - v5.3.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/ontology/organ_ontology.json - v5.3.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/ontology/organ_part_ontology.json - v5.3.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/ontology/process_type_ontology.json - v5.3.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/ontology/protocol_type_ontology.json - v5.3.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/ontology/sequencing_ontology.json - v1.1.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/ontology/species_ontology.json - v5.3.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/ontology/strain_ontology.json - v5.3.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[module/ontology/time_unit_ontology.json - v5.3.0] - 2018-06-26

Added

Added optional field ontology_label to all ontology modules. Fixes Issue #383

[bundle/biomaterial.json - v10.1.0] - 2018-06-25

Added

Added optional field organ_donation_death_type to module death. Fixes Issue #361.

[type/biomaterial/donor_organism.json - v7.1.0] - 2018-06-25

Added

Added optional field organ_donation_death_type to module death. Fixes Issue #361.

[module/biomaterial/death.json - v5.3.0] - 2018-06-25

Added

Added optional field organ_donation_death_type to module death. Fixes Issue #361.

[bundle/biomaterial.json - v10.0.0] - 2018-06-25

Changed

Changed the type of is_living to a string and added an enum to accommodate "unknown" as well as yes/no. Fixes Issue #371.

[type/biomaterial/donor_organism.json - v7.0.0] - 2018-06-25

Changed

Changed the type of is_living to a string and added an enum to accommodate "unknown" as well as yes/no. Fixes Issue #371.

[bundle/protocol.json v10.2.0] - 2018-06-25

Added

Added new aggregate_generation_protocol.json schema. Fixes Issue #345.

[type/protocol/biomaterial_collection/aggregate_generation_protocol.json v1.0.0] - 2018-06-25

Added

Added new aggregate_generation_protocol.json schema. Fixes Issue #345.

[bundle/protocol.json - v10.1.1] - 2018-06-25

Added

Added optionals small_molecules and differentiation_media fields.

[type/protocol/biomaterial_collection/differentiation_protocol.json - v1.1.1] - 2018-06-25

Added

Added optionals small_molecules and differentiation_media fields.

[bundle/biomaterial.json - v9.1.1] - 2018-06-20

Changed

Updated the schema URL pattern to cell_line.

[type/biomaterial/cell_line.json - v8.1.1] - 2018-06-20

Changed

Updated the schema URL pattern to cell_line.

[bundle/process.json - v7.0.0] - 2018-06-11

Changed

Renamed start_time to length_of_time with updated description and added a number-only patterns.

Added

Added length_of_time_unit referencing the time unit ontology module to provide a time unit for the duration in the length_of_time field.

[type/process/process.json - v3.0.0] - 2018-06-11

Changed

Renamed start_time to length_of_time with updated description and added a number-only patterns.

Added

Added length_of_time_unit referencing the time unit ontology module to provide a time unit for the duration in the length_of_time field.

[core/process/process_core.json - v6.0.0] - 2018-06-11

Changed

Renamed start_time to length_of_time with updated description and added a number-only patterns.

Added

Added length_of_time_unit referencing the time unit ontology module to provide a time unit for the duration in the length_of_time field.

[bundle/biomaterial.json - v9.1.0] - 2018-06-11

Added

Added optional field confluency to cell_line

[type/biomaterial/cell_line.json - v8.1.0] - 2018-06-11

Added

Added optional field confluency to cell_line

[bundle/biomaterial.json - v9.0.0] - 2018-06-11

Removed

Removed field karyotype from biomaterial_core as it does not apply to all biomaterials.

[type/biomaterial/cell_suspension.json - v8.0.0] - 2018-06-11

Removed

Removed field karyotype from biomaterial_core as it does not apply to all biomaterials.

[type/biomaterial/donor_organism.json - v6.0.0] - 2018-06-11

Removed

Removed field karyotype from biomaterial_core as it does not apply to all biomaterials.

[type/biomaterial/organoid.json - v8.0.0] - 2018-06-11

Removed

Removed field karyotype from biomaterial_core as it does not apply to all biomaterials.

[type/biomaterial/specimen_from_organism.json - v6.0.0] - 2018-06-11

Removed

Removed field karyotype from biomaterial_core as it does not apply to all biomaterials.

[type/biomaterial/cell_line.json - v8.0.0] - 2018-06-11

Removed

Removed field karyotype from biomaterial_core as it does not apply to all biomaterials.

Added

Added optional field karyotype to cell_line

[core/biomaterial/biomaterial_core.json - v9.0.0] - 2018-06-11

Removed

Removed field karyotype from biomaterial_core as it does not apply to all biomaterials.

[bundle/biomaterial.json - v8.0.0] - 2018-06-11

Removed

Removed fields growth_conditions and cell_morphology from organoid.

[type/biomaterial/organoid.json - v7.0.0] - 2018-06-11

Removed

Removed fields growth_conditions and cell_morphology from organoid.

[bundle/biomaterial.json - v7.2.0] - 2018-06-11

Added

Added the field purchased_specimen referencing the purchased_reagents module, to capture purchasing of specimens such as blood samples.

[type/biomaterial/specimen_from_organism.json - v5.3.0] - 2018-06-11

Added

Added the field purchased_specimen referencing the purchased_reagents module, to capture purchasing of specimens such as blood samples.

[type/biomaterial/cell_line.json - v7.1.0] - 2018-06-11

Added

Added the field tissue referencing the organ part ontology module, to capture the tissue the cell line was derived from.

[bundle/biomaterial.json - v7.1.0] - 2018-06-11

Added

Added the field tissue referencing the organ part ontology module, to capture the tissue the cell line was derived from.

[core/project/project_core.json - v6.0.0] - 2018-06-11

Changed

Made project_description a required field.

[type/project/project.json - v6.0.0] - 2018-06-11

Changed

Made project_description a required field.

[bundle/project.json - v6.0.0] - 2018-06-11

Changed

Made project_description a required field.

[bundle/biomaterial.json - v7.0.1] - 2018-06-07

Changed

Updated definition of ischemic_time to address confusion from users.

[type/biomaterial/specimen_from_organism.json - v5.2.3] - 2018-06-07

Changed

Updated definition of ischemic_time to address confusion from users.

[module/biomaterial/state_of_specimen.json - v5.2.2] - 2018-06-07

Changed

Updated definition of ischemic_time to address confusion from users.

[type/project/project.json - v5.3.0] - 2018-06-06

Changed

Added a pointer to new module with three optional fields to track project funders.

[module/project/funder.json - v1.0.0] - 2018-06-06

Added

A new module with three optional fields to track project funders.

[core/project/project_core.json - v5.2.2] - 2018-06-06

Changed

Updated descriptions and examples.

[bundle/protocol.json - v10.0.1] - 2018-06-05

Changed

Added new protocol types to the oneOf list for protocol bundle.

[module/biomaterial/timecourse.json - v1.0.0] - 2018-06-05

Added

Added new module to capture timecourse information.

[type/protocol/biomaterial_collection/ipsc_induction_protocol.json - v1.0.0] - 2018-06-05

Added

Added new protocol for IPSC induction.

[type/protocol/biomaterial_collection/differentiation_protocol.json - v1.0.0] - 2018-06-05

Added

Added new protocol for cell differentiation.

[type/file/reference_file.json - v2.0.0] - 2018-06-04

Changed

Made fields ncbi_taxon_id, genus_species, assembly_type, reference_type and reference_version required.

[type/protocol/imaging/imaging_protocol.json - v7.0.0] - 2018-06-04

Changed

Made field protocol_type required.

[type/protocol/biomaterial_collection/dissociation_protocol.json - v4.0.0] - 2018-06-04

Changed

Made field nucleic_acid_source required.

[type/protocol/analysis/analysis_protocol.json - v7.0.0] - 2018-06-04

Changed

Made field protocol_type required.

[type/biomaterial/cell_line.json - v7.0.0] - 2018-06-04

Changed

Made field cell_line_type required.

[type/biomaterial/cell_line.json - v6.1.1] - 2018-06-04

Changed

Updated the description for the schema.

[bundle/biomaterial.json - v5.2.1] - 2018-06-01

Changed

Dependency update for specimen_from_organism

[type/biomaterial/specimen_from_organism.json - v5.2.1] - 2018-06-01

Changed

Dependency update for preserveration_storage

[module/biomaterial/preservation_storage.json - v5.2.1] - 2018-06-01

Changed

Fixed (patch) incorrect user-friendly name.

[bundle/protocol.json - v8.0.0] - 2018-06-01

Changed

Updated protocol types.

[type/protocol/sequencing/sequencing_protocol.json - v2.0.0] - 2018-06-01

Added

Added the field sequencing_approach referencing the new sequencing ontology module and made it required.

Removed

Removed the field protocol_type as it duplicates the information in sequencing_approach.

[type/protocol/sequencing/library_preparation_protocol.json - v7.0.0] - 2018-06-01

Removed

Removed the field protocol_type as it duplicates the information in library_preparation_approach.

[type/protocol/biomaterial_collection/enrichment_protocol.json - v2.0.0] - 2018-06-01

Changed

Changed the type of field enrichment_method to use a different ontology module.

Removed

Removed the field protocol_type as it duplicates the information in enrichment_method.

[type/protocol/biomaterial_collection/dissociation_protocol.json - v2.0.0] - 2018-06-01

Changed

Changed the type of field dissociation_method from string-enums to ontology object references.

Removed

Removed the field protocol_type as it duplicates the information in dissociation_method.

[type/protocol/biomaterial_collection/collection_protocol.json - v7.0.0] - 2018-06-01

Changed

Changed the type of field collection_method from string-enums to ontology object references and made it required.

Removed

Removed the field protocol_type as it duplicates the information in collection_method.

[module/ontology/sequencing_ontology.json - v1.0.0] - 2018-06-01

Added

Added a new ontology module for sequencing approach.

[*.json - various version numbers - patch increment] - 2018-05-31

Changed

Updated regex for all 66 schemas to match a range of schema.{}.humancellatlas domains and accept both version numbers in standard major.minor.patch format and "latest". Patch version increment to all schema versions.

[*.json - various version numbers - patch increment] - 2018-05-25

Changed

Updated regex for all 66 schemas to match http or https and schema.data or schema.dev.data.

[bundle/protocol.json - v7.1.0] - 2018-05-24

Changed

Updated enrichment_protocol.

[type/protocol/biomaterial_collection/enrichment_protocol.json - v1.1.0] - 2018-05-24

Changed

Changed the type of field enrichment_approach from string-enums to ontology object references.

[module/ontology/enrichment_ontology.json - v1.0.0] - 2018-05-24

Added

Added a new ontology module for enrichment approach.

[bundle/protocol.json - v7.0.1] - 2018-05-24

Changed

Updated all protocol type references.

[type/protocol/protocol.json - v6.0.1] - 2018-05-24

Changed

Changed protocol_type ontology reference for all protocol schemas to reference process_type_ontology module for ontology modelling reasons.

[type/protocol/sequencing/library_preparation_protocol.json - v1.0.1] - 2018-05-24

Changed

Changed protocol_type ontology reference for all protocol schemas to reference process_type_ontology module for ontology modelling reasons.

[type/protocol/sequencing/sequencing_protocol.json - v6.0.1] - 2018-05-24

Changed

Changed protocol_type ontology reference for all protocol schemas to reference process_type_ontology module for ontology modelling reasons.

[type/protocol/imaging/imaging_protocol.json - v6.0.1] - 2018-05-24

Changed

Changed protocol_type ontology reference for all protocol schemas to reference process_type_ontology module for ontology modelling reasons.

[type/protocol/biomaterial_collection/enrichment_protocol.json - v1.0.1] - 2018-05-24

Changed

Changed protocol_type ontology reference for all protocol schemas to reference process_type_ontology module for ontology modelling reasons.

[type/protocol/biomaterial_collection/dissociation_protocol.json - v1.0.1] - 2018-05-24

Changed

Changed protocol_type ontology reference for all protocol schemas to reference process_type_ontology module for ontology modelling reasons.

[type/protocol/biomaterial_collection/collection_protocol.json - v6.0.1] - 2018-05-24

Changed

Changed protocol_type ontology reference for all protocol schemas to reference process_type_ontology module for ontology modelling reasons.

[type/protocol/analysis/analysis_protocol.json - v6.0.1] - 2018-05-24

Changed

Changed protocol_type ontology reference for all protocol schemas to reference process_type_ontology module for ontology modelling reasons.

[type/protocol/sequencing/library_preparation_protocol.json - v2.0.0] - 2018-05-24

Changed

Changed the type of fields library_construction_approach, library_preamplification_method and cdna_library_amplification_method from string-enums to ontology object references.

[module/ontology/library_amplification_ontology.json - v1.0.0] - 2018-05-24

Added

Added a new ontology module for library amplification approach.

[module/ontology/library_construction_ontology.json - v1.0.0] - 2018-05-24

Added

Added a new ontology module for library construction approach.

[module/process/purchased_reagents.json - v6.0.0] - 2018-05-24

Changed

Field batch_number changed to lot_number.

[core/biomaterial/biomaterial_core.json - v6.0.0] - 2018-05-23

Removed

Removed the has_input_biomaterial property as the purpose is misleading and no longer required by the spreadsheet importer

[type/biomaterial/cell_line.json - v5.2.1] - 2018-05-21

Added

Added supplier field to capture supplier of purchased cell line. Added lot_number field to capture lot number of purchased cell line. Added induced pluripotent to enum of cell line type.

[module/biomaterial/cell_morphology.json - v6.0.0] - 2018-05-21

Changed

Changed name of cell_viability field to percent_cell_viability to accurately reflect the value of this field.

Added

Added a new field - cell_viability_result - to capture whether the cell_viability_method assay passed or failed.

This update is a major change due to the changing of the cell_viability field name.

[type/biomaterial/cell_suspension.json - v6.0.0] - 2018-05-21

Changed

Changed the field target_cell_type to selected_cell_type.

[module/process/purchased_reagents.json - v5.2.0] - 2018-05-18

Added

Added a new field - kit_titer - to record the appropriate titer and volume recommendations found in a kit's Certificate of Analysis.

[module/ontology/species_ontology.json - v5.1.1] - 2018-05-18

Changed

Bug fix to make ontology validation work - root species ontology node changed from "NCBITaxon:131567" to ["OBI:0100026","NCBITaxon:2759"] to reflect usage in HCAO. Patch update to referencing biomaterials and bundles.

[module/biomaterial/growth_conditions.json - v6.0.0] - 2018-05-18

Changed

This change is to make the fields mycoplasma_testing_method and mycoplasma_testing_results enums. This is a major change.

[bundle/process.json - v5.2.1] - 2018-03-15

Changed

Bug fix to make reference bundle schema reference its own definition with correct version

[bundle/reference.json - v1.0.1] - 2018-03-15

Changed

Bug fix to make reference bundle schema use the correct dependent version numbers

[type/file/reference_file.json - v1.0.1] - 2018-03-15

Changed

Bug fix to make reference_file schema use the correct dependent version numbers

[bundle/reference.json - v1.0.0] - 2018-03-15

Added

Added reference bundle entity to address the analysis pipeline use case for reference bundles

[type/file/reference_file.json - v1.0.0] - 2018-03-15

Added

Added reference_file entity to address the analysis pipeline use case for reference bundles

[bundle/links.json - v1.0.0] - 2018-03-15

Added

A links entity was added to allow linking of entites in bundles.

[bundle/process.json - v5.2.0] - 2018-03-13

Changed

The new generic process type was added to the list of processes that can be imported into a process bundle

[tpye/process/process.json - v1.0.0] - 2018-03-13

Added

A new generic process type was created to allow the creation of processes for which no metadata is available.

[all modules/* and core/* entities - v5.1.0] - 2018-03-13

Changed

The field describedBy was removed from the list of required fields as it was redundant. Only type entites and bundle entities need to explicitly declare a schema in data instances. As a result, all referencing types and bundles were also updated.

[type/biomaterial/specimen_from_organism.json - v5.1.0] - 2018-03-13

Changed

The field organ_part was removed from the list of required fields as it was causing issues for datasets where a sub-organ sampling site is not known.

[module/project/publication.json - v5.0.1] - 2018-02-28

Fixed

The incorrect field title in the list of required field was fixed to be the correct field publication_title.

[type/project/project.json - v5.0.1] - 2018-02-28

Fixed

Reference to patch version update of module/project/publication.json was updated.

[type/biomaterial/cell_line.json - v5.0.1] - 2018-02-28

Fixed

Reference to patch version update of module/project/publication.json was updated.

[bundle/project.json - v5.0.1] - 2018-02-28

Fixed

Reference to patch version update of type/project/project.json was updated.

[bundle/biomaterial.json - v5.0.1] - 2018-02-28

Fixed

Reference to patch version update of type/biomaterial/cell_line.json was updated.

5.0.0 - 2018-02-19

Added

  • New fields based on feedback from extensive user evaluation sessions
  • New modules which now capture domain-specific fields
  • New field attributes (e.g. example, user_friendly) to improve schema clarity
  • New example v5.0.0 JSON files and template spreadsheets
  • New markdown-formatted table of current metadata fields for easy browsing

Changed

  • Structural changes to the hierarchy of schema entities
  • Updated field names and descriptions based on user feedback
  • Expanded use ontologies to validate relevant fields
  • Improved automatic Travis CI testing (new passing and failing example JSON)
  • Improved documentation for schema updates (changelog.md, Metadata_schema_lifecycle_doc.md)

Removed

  • Removal of fields that were deemed unnecessary

v4.6.1 - 2017-12-15

Removed

  • Remove controlled vocabulary for file.file_format
  • Remove regex for file.filename

v4.6.0 - 2017-12-14

Added

  • Add name field to file definition in analysis_bundle.json

Changed

  • Change checksum from required to optional in analysis_bundle.json

Removed

  • Remove undefined property log from task definition in analysis_bundle.json

v4.5.0 - 2017-12-13

Added

  • Add analysis_bundle.json as a core type

Changed

  • Update assay_bundle.json to include has_input and has_output references
  • Update analysis.json to be fully compliant with JSON schema format
  • Update enums on multiple fields to based on example test datasets
  • Convert contact.country and contact.country_division free text string fields

v4.4.0 - 2017-12-08

Added

  • Add core field to assay_bundle.json, project_bundle.json, and sample_bundle.json
  • Add bundle schemas to list of accepted core types
  • Add description to derived_from field in sample_bundle.json

Changed

  • Made sample_bundle.json, assay_bundle.json, and project_bundle.json objects instead of arrays

v4.3.0 - 2017-12-06

Added

  • Add "10X" and "10x" as options to seq.library_construction, rna.library_construction, and single_cell.cell_handling
  • Add "Cambridgeshire" as options to contact.country_division

Changed

  • Increase maximum state_of_specimen.ischemic_time and state_of_specimen.postmortem_interval value to 1000000

Fixed

  • Fix sample.biosd_sample regex in sample.json

v4.2.0 - 2017-12-05

Changed

  • Change donor.json' fields height, weight, and age from number type to string type with a regex to allow entering a number range
  • Extend enums for donor.age_unit to allow plural forms
  • Change death.time_of_death from required to optional

v4.1.0 - 2017-12-05

Changed

  • Update ontologies for body_part_ontology.json and cell_type_ontology.json
  • Add ontology restrictions for disease_ontology.json
  • Update example JSON used for testing for above ontologies

Fixed

  • Fix sample.biosd_sample regex in sample.json

v4.0.0 - 2017-11-21

Added

  • Schema for entities (cell_suspension, immortalized_cell_line, ingest, organoid, file, primary_cell_line, specimen_from_organism, imaging)
  • Schema for ontologies (ontology_meta, body_part_ontology, cell_type_ontology, disease_ontology)
  • Schema for bundles (assay_bundle, project_bundle, sample_bundle)
  • Fields for all entities (name, description, core, id)
  • Specific fields (contact.phone, donor.alcohol_history, donor.nutritional_state, donor.smoking_history, ncbi_taxon_id, genus_species, derived_from, sample_acessions, )

Changed

  • Schema cell_line split into immortalized_cell_line and primary_cell_line schema
  • Schema preservation.json to state_of_specimen.json
  • Field sample.donor to own donor.json
  • Field id to <entity>_id
  • Fields moved to core schema (id, species, name, description)
  • Fields project.ddjb_trace and project.sra_project to project.insdc_project
  • Field project.ncbi_bioproject to project.insdc_study
  • Fields sra_experiment and ena_experiment to insdc_experiment
  • Fields ena_run and sra_run to insdc_run
  • Fields sample.ena_sample and sample.ncbi_biosample to sample.insdc_sample
  • Field organ from sample.json to specimen_from_organism.json
  • Field preservation from sample.json to state_of_specimen.json
  • Fields enrichment, total_estimated_cells, well from sample.json to cell_suspension.json
  • Field cell_type from well.json to cell_suspension.json

Removed

  • Field core from non-core entities
  • Field culture_type from sample.json
  • Field sample.geo_sample
  • Field sample.title

v3.0 - 2017-09-19

Added

  • First official release.

Template changelog formatting

[schema_name.json - vX.Y.Z] - YYYY-MM-DD

Added

Changed

Removed

Fixed

Deprecated

Security