Cypository - PyTorch Mask-RCNN for Cell Segmentation

Parameter list:

imagePath - path to the image dataset. Required.
--model - currently only one model exists (zeisscyto).
--outputPath - path where output files should be saved to.
--channel - channel containing the cytoplasm stain. 0-based indexing.
--threshold - a value between 0 and 1 to filter out false detections. Default is 0.6.
--overlap - the image is split into overlapping tiles before cytoplasm detection. This parameter specifes the amount of overlap in pixels.
--scalingFactor - factor by which to increase/decrease image size by. Default is 1 (no resizing).
--GPU - if multiple GPUs are available, this specifies which GPU card to use. Default behavior is the first GPU card (0-based indexing).