Dependancies

[sophieastrof]

Hi ! I managed to install Graphviz, R, Kallisto, and RNAlysis and can open RNAlysis GUI. But
How do I automatically install the list of dependencies you listed?
Thanks,
Sophie

[GuyTeichman]

Hi Sophie,
I apologise for the very late response, I must have missed the notification for your question.

Other than Graphviz, R, and kallisto, all other dependencies should be installed automatically when you install RNAlysis.
If you used the command pip install RNAlysis, then only the basic dependencies of RNAlysis will be installed (likely to work out of the box on any computer).
To install all of the dependencies (which may not work on every setup), use the command pip install RNAlysis[all].
This command should work even if you already have a version of RNAlysis installed.
If you also want to make sure you are running the latest version, use the command pip install --upgrade RNAlysis[all] - this will both install all dependencies, and upgrade RNAlysis to the latest version.

Feel free to comment or create a new post if you have any questions or run into trouble when installing the dependencies.

Good luck,
Guy.