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I have multiome snRNA+snATAC data and the snRNA seq data were analyzed with scanpy.
How to integrate the snRNA seq data generated by scanpy with the snATAC seq data generated by ArchR ?
From the documents https://www.archrproject.com/bookdown/cross-platform-linkage-of-scatac-seq-cells-with-scrna-seq-cells.html
How to generate the RangedSummarizedExperiment data set ? Is it possible to convert the anndata used by scanpy to RangedSummarizedExperiment data?
Thanks a lot
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Hello:
I have multiome snRNA+snATAC data and the snRNA seq data were analyzed with
scanpy
.How to integrate the snRNA seq data generated by
scanpy
with the snATAC seq data generated byArchR
?From the documents https://www.archrproject.com/bookdown/cross-platform-linkage-of-scatac-seq-cells-with-scrna-seq-cells.html
How to generate the
RangedSummarizedExperiment
data set ? Is it possible to convert theanndata
used byscanpy
toRangedSummarizedExperiment
data?Thanks a lot
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