You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I am getting an error when trying to create arrow files from fragment files I have been given.
Command (straight from the tutorial): ArrowFiles <- createArrowFiles( inputFiles = inputFiles, sampleNames = names(inputFiles), minTSS = 4, #Dont set this too high because you can always increase later minFrags = 1000, addTileMat = TRUE, addGeneScoreMat = TRUE )
Subset of the error: 2024-06-13 08:19:11.674659 : validBC, Class = NULL validBC: length = 0 NULL
If I head the fragment file I can see the barcodes have the timepoint (metadata) added to them. See below.
reacted with thumbs up emoji reacted with thumbs down emoji reacted with laugh emoji reacted with hooray emoji reacted with confused emoji reacted with heart emoji reacted with rocket emoji reacted with eyes emoji
-
I am getting an error when trying to create arrow files from fragment files I have been given.
Command (straight from the tutorial):
ArrowFiles <- createArrowFiles(
inputFiles = inputFiles,
sampleNames = names(inputFiles),
minTSS = 4, #Dont set this too high because you can always increase later
minFrags = 1000,
addTileMat = TRUE,
addGeneScoreMat = TRUE
)
Subset of the error:
2024-06-13 08:19:11.674659 : validBC, Class = NULL
validBC: length = 0 NULL
If I head the fragment file I can see the barcodes have the timepoint (metadata) added to them. See below.
Thanks a lot !!
Beta Was this translation helpful? Give feedback.
All reactions