You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Doublet scores never finishes running (ran for 6 hours stalled on same message).
The same data has been run on Mac and finished within 2 hours.
Anybody have similar issues running on cluster server?
> arrow.files
[1] "data//Cis_4weeksOFF.arrow" "data//EZH2i_OFF.arrow" "data//EZH2i_ON.arrow"
[4] "data//POT.arrow" "data//Untreated.arrow"
> ## Infer doublets
> doublet.scores <- addDoubletScores(input = arrow.files,
+ k = 10,
+ knnMethod = "UMAP",
+ LSIMethod = 1)
ArchR logging to : ArchRLogs/ArchR-addDoubletScores-3ce1f44d853d98-Date-2024-04-22_Time-10-00-52.998132.log
If there is an issue, please report to github with logFile!
2024-04-22 10:00:53.153 : Batch Execution w/ safelapply!, 0 mins elapsed.
2024-04-22 10:00:53.253205 : Cis_4weeksOFF (1 of 5) : Computing Doublet Statistics, 0.002 mins elapsed.
Filtering 1 dims correlated > 0.75 to log10(depth + 1)
Warning: Data is of class matrix. Coercing to dgCMatrix.
reacted with thumbs up emoji reacted with thumbs down emoji reacted with laugh emoji reacted with hooray emoji reacted with confused emoji reacted with heart emoji reacted with rocket emoji reacted with eyes emoji
-
Doublet scores never finishes running (ran for 6 hours stalled on same message).
The same data has been run on Mac and finished within 2 hours.
Anybody have similar issues running on cluster server?
Beta Was this translation helpful? Give feedback.
All reactions