ArchRProject

[TingTingShao]

Code

ArrowFiles
'arrows''D19-13000.arrow''D19-8612.arrow''D19-8613.arrow'
brain1 <- ArchRProject(
ArrowFiles = 'D19-8613.arrow',
outputDirectory = "brain.microglia",
copyArrows = F
)
...... test all three of them, all three of them can be created successfully.

However:

with all the ArrowFiles, it shows error:

brain1 <- ArchRProject(
ArrowFiles = ArrowFiles,
outputDirectory = "brain.microglia",
copyArrows = F
)

Error

Validating Arrows...

Error in H5Fopen(file, flags = flags, fapl = fapl, native = native): HDF5. File accessibility. Unable to open file.
Traceback:

1. ArchRProject(ArrowFiles = ArrowFiles, outputDirectory = "brain.microglia",
   . copyArrows = F)
2. unlist(lapply(ArrowFiles, .validArrow))
3. lapply(ArrowFiles, .validArrow)
4. FUN(X[[i]], ...)
5. h5read(ArrowFile, "Class")
6. h5checktypeOrOpenLoc(file, readonly = TRUE, fapl = NULL, native = native)
7. H5Fopen(file, flags = flags, fapl = fapl, native = native)

Could really need your help here, thanks!

BTW, createArrowfiles also encounter such problem, I can only create them one by one (one of the log files is attached, most of the time, it crushed and log file is empty).
ArchR-createArrows-29a73f7fb98dde-Date-2023-12-02_Time-23-20-48.746458.log

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