Peak name continuity

[jtls0n]

Is there a mechanism to maintain peak "names" through functions?

For example, the names of the elements in the Granges object from addReproduciblePeakSet seem to be completely discarded in the summarized experiment output of getMarkerFeatures.

The peak names are also discarded in the output of getGroupSE, but now are labeled as a string of "f" and the index.

Manually relabeling the peakSet to eliminate any possible duplicate names from addReproduciblePeakSet does not solve this.

names(proj@peakSet) <- (proj@peakSet %>% {paste(seqnames(.), start(.), end(.), sep="_")})

I may be missing something but it is a bit cumbersome to manually relabel the outputs of getMarkerFeatures or getGroupSE.