Specify annoPath in addArchAnnotations

[ChloeHJ]

Hi, since I am running archR via server, I often don't have writing permission to the R packages and addArchAnnotations that require downloading the Anno files to R/ directories fail. Is it possible to add a parameter in the addArchAnnotations function to specify the annoPath?

Many thanks!

[rcorces]

I've added this feature on a new branch called dev_annoPath via c9742ad. I have not tested the additions and would appreciate if you could install this branch and report back if it works.

devtools::install_github("GreenleafLab/ArchR", ref="dev_annoPath", repos = BiocManager::repositories(), upgrade = "never")
#to unload a package and reload
detach("package:ArchR", unload=TRUE)
library(ArchR)