Changing ylims in Plot Footprint

[waltno]

I am finding it difficult to see the whole footprint. It'd be cool to adjust the settings to fit the whole plot or be able to manually set the y limits.

What I get:
footprints.pdf

[rcorces]

hmmm. thats not supposed to happen. The ylim is supposed to auto adjust . do you see this with multiple different factors or just this one?

ArchR/R/Footprinting.R

Line 579 in 968e442

ylim = c(quantile(plotFootDF$mean, 0.0001), 1.15*quantile(smoothFoot, 0.999)),

[waltno]

I see it with most plots I make :/ I can fork it and adjust it for my purposes

[rcorces]

I assume you dont see this with the tutorial data though right?
https://www.archrproject.com/bookdown/normalization-of-footprints-for-tn5-bias.html