Calculte Differential accessible regions for single-cell ATAC and Bulk ATAC #1376
1221li
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Feature Requests
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No. ArchR cannot handle bulk ATAC-seq. You will need to analyze scATAC with ArchR, bulk ATAC with something else, and use custom scripts to compare them. |
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Thank you very much for your reply. If I have single cell ATAC and bulk ATAC data of the same sample, can I use ARCHR to get the Differential accessible regions ? |
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Dear author, I can successfully use single-cell ATAC of different samples to analyze the Differential accessible regions, but NOW I want to calculate the Differential accessible regions between single-cell ATAC of sample 1 and Bulk ATAC of sample 2 by ARCHR, I have no clue about this, I would like to ask, can ARCHR answer this question？
I am looking forward to your reply ！
best wishes！
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