Installing qiime on google colab

[GhsJahanmir]

Dear Creator,

I found your very useful qiime course on the YouTube and finally find the materials for the course here. However, when I tried to follow exactly the video and install it on the google Colab, it never accomplished.

!git clone https://github.com/gibbons-lab/isb_course_2021 materials
%cd materials
%run setup_qiime2

Even I tried your suggested commend (bellow) in forum, it did not work.

!wget https://github.com/Gibbons-Lab/isb_course_2021/raw/main/setup_qiime2
%run setup_qiime2

As I want to run my code on the google Colab, do you have any suggestions for me?

Best Regards,
Ghs

[cdiener]

Hi, I would recommend running the version from this year which will take place from October 11-13th. The notebooks there will be up to date and are running fine :) If you want to run the version from 2021 you might have yo replace the setup script with the one from 2023 since we adapted it for newer Qiime2 versions.

[GhsJahanmir]

Hi, I would recommend running the version from this year which will take place from October 11-13th. The notebooks there will be up to date and are running fine :) If you want to run the version from 2021 you might have yo replace the setup script with the one from 2023 since we adapted it for newer Qiime2 versions.

Dear Christian Diener,

I followed your suggestion and yes it works.

Thanks for your prompt reply.

Best Regards,
Ghs