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Georgakopoulos-Soares-lab

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  1. MAFin MAFin Public

    CLI tool to process and analyze MAF files ( Multiple alignment format )

    Python 10

  2. ZSeeker ZSeeker Public

    Bioinformatics CLI tool to extract potential Z-DNA forming sequences from fasta files

    Python 3

  3. MAFcounter_hashmaps MAFcounter_hashmaps Public

    MAFcounter is a multi-threaded K-MER frequency counting program designed to work on multiple sequence alignment files

    C++ 3

  4. hdna_rdna_homo_sapiens hdna_rdna_homo_sapiens Public

    Jupyter Notebook 2

  5. dna-quasi-primes dna-quasi-primes Public

    Repo for human quasi prime case study and manuscript for Mouratidis, Konnaris, Chantzi, and Chan et al.

    Jupyter Notebook 1

  6. nullomer_topography nullomer_topography Public

    Jupyter Notebook 1

Repositories

Showing 10 of 28 repositories
  • zseeker_front Public

    Front End of ZSeeker Webpage to Submit Jobs for ZDNA region finding

    Georgakopoulos-Soares-lab/zseeker_front’s past year of commit activity
    HTML 0 0 0 0 Updated Apr 3, 2025
  • ZSeeker Public

    Bioinformatics CLI tool to extract potential Z-DNA forming sequences from fasta files

    Georgakopoulos-Soares-lab/ZSeeker’s past year of commit activity
    Python 3 GPL-3.0 0 0 0 Updated Apr 3, 2025
  • zseeker_sensitivity_analysis Public

    Sensitivity analysis for dinculeotide transition scores.

    Georgakopoulos-Soares-lab/zseeker_sensitivity_analysis’s past year of commit activity
    Python 0 0 0 0 Updated Apr 3, 2025
  • zseeker_back Public

    Go Backend for ZSeeker Job submission

    Georgakopoulos-Soares-lab/zseeker_back’s past year of commit activity
    Go 0 0 0 0 Updated Apr 2, 2025
  • ZSeeker_docker Public

    ZSeeker web application dockerized

    Georgakopoulos-Soares-lab/ZSeeker_docker’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Mar 20, 2025
  • MAFin Public

    CLI tool to process and analyze MAF files ( Multiple alignment format )

    Georgakopoulos-Soares-lab/MAFin’s past year of commit activity
    Python 10 GPL-3.0 0 0 0 Updated Mar 19, 2025
  • hairpinDB-Front-End Public

    The front end application of hairpinDB database that stores invert repeat motifs

    Georgakopoulos-Soares-lab/hairpinDB-Front-End’s past year of commit activity
    HTML 0 0 0 0 Updated Mar 9, 2025
  • MAFcounter-pipelines Public

    Pipelines to test scaling of MAF Counter tool and performance against other k-mer counters.

    Georgakopoulos-Soares-lab/MAFcounter-pipelines’s past year of commit activity
    Shell 0 0 0 0 Updated Mar 5, 2025
  • MAFcounter Public
    Georgakopoulos-Soares-lab/MAFcounter’s past year of commit activity
    C++ 1 0 0 0 Updated Mar 5, 2025
  • invertiaDB-analysis Public
    Georgakopoulos-Soares-lab/invertiaDB-analysis’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Feb 8, 2025
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