From 9d1db7faeeaa6811469469c779cfcae3f5bffa45 Mon Sep 17 00:00:00 2001 From: Laurent Jourdren Date: Wed, 25 Oct 2023 16:45:15 +0200 Subject: [PATCH] FIX: In demux_run.py, fix typo when parsing additional arguments for bcl2fastq. --- src/main/python/demux_run.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/main/python/demux_run.py b/src/main/python/demux_run.py index 15a9183b..fcb3de6f 100644 --- a/src/main/python/demux_run.py +++ b/src/main/python/demux_run.py @@ -490,7 +490,7 @@ def create_bcl2fastq_command_line(run_id, command_path, input_run_data_path, fas if common.is_conf_key_exists(BCL2FASTQ_ADDITIONNAL_ARGUMENTS_KEY, conf): additional_args = conf[BCL2FASTQ_ADDITIONNAL_ARGUMENTS_KEY] additional_args = re.sub('\\s+', ' ', additional_args).strip() - args.extends(additional_args.split(' ')) + args.extend(additional_args.split(' ')) # Retrieve output in file args.extend(['>', quote(tmp_path + '/bcl2fastq_output_' + run_id + '.out')])