.gitignore

target
build

scripts/version.pyc
.coverage
/build/dist/
/projects/*/dist/

# binary/compiled files
/bin/
/lib/
*.o
performance_testing/vcs
tags
/source-package/
/dependencies/
/env-wecall

# logging
*.log

# valgrind
callgrind.out.*

# editor temp files
*~
*.kate-swp
*#
*.swp

# user project configs
.idea
cpp/.idea

# packaging
/deployable
/python/dist
/python/build
/test-drivers/dist
/test-drivers/build
/properties.json
.pytest_cache/

# report folder
/report
/results

# Third party tools
/third-party-tools

cpp/cmake-build-*e*
cpp/src/version/version.cpp
README.txt
./Licences.txt
wecall-*.tar.gz
conda-bld
weCall-userguide.pdf
/Licences.txt

*.deb
*.rpm
*.egg-info
weCall-Linux-x86_64.tar.gz
environment_production.yaml
environment_test.yaml
/doc/wecall-params.tex
__pycache__
test-results
xunit-status.xml
.cache
*.py.bak
.pyest.cache
wecall-env

#vendor noise
vendor/samtools/bcftools/bcftools
vendor/samtools/misc/ace2sam
vendor/samtools/misc/bamcheck
vendor/samtools/misc/maq2sam-long
vendor/samtools/misc/maq2sam-short
vendor/samtools/misc/md5fa
vendor/samtools/misc/md5sum-lite
vendor/samtools/misc/wgsim