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GenomicBreeding

Stable Dev Build Status

Dev stuff:

REPL prelude

julia --threads 8,1 --load test/prelude.jl

Format and test

time julia test/cli_tester.jl

Docstring conventions

  • Structs and main functions with title description, etc including Examples with doctests
  • Methods, i.e. functions with the same names but different input types follow the usual Julia docstring pattern, i.e. the function signature, then some description, then details including parameter description, and finally examples with doctests

Initialise a new package

using PkgTemplates
t = Template(;
    user="GenomicBreeding",
    authors=["jeffersonparil@gmail.com"],
    dir="./",
    julia=v"1.11",
    plugins=[
        License(; name="GPL-3.0+", path=nothing, destination="LICENSE.md"),
        CompatHelper(),
        GitHubActions(;
        osx=false,
        windows=false,
        ),
        Documenter{GitHubActions}(),
        Git(;
            ignore=[
                "*.code-workspace",
                "*.jl.*.cov",
                "*.jl.cov",
                "*.jl.mem",
                ".DS_Store",
                "/docs/Manifest.toml",
                "/docs/build/",
                "Manifest.toml",
                "docs/build/",
                "tmp/",
                "*.svg",
                "*.jld2",
                "*.tsv",
                "*.csv",
                "*.txt"
            ],
            ssh=true
        ),
    ],
)
t("GBIO.jl")

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Genomic breeding workflow

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