From 2c92c6ee8aec67db62562e0235b78b2f9720906b Mon Sep 17 00:00:00 2001 From: Fabian Engelniederhammer Date: Thu, 19 Dec 2024 16:29:56 +0100 Subject: [PATCH 1/2] fix: adapt SILO to 0.5.0 changes See https://github.com/GenSpectrum/LAPIS-SILO/pull/633 resolves #65 --- docker-compose.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/docker-compose.yml b/docker-compose.yml index 00f1286..1e2e2b8 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -19,7 +19,7 @@ services: image: ghcr.io/genspectrum/lapis-silo:${SILO_TAG} ports: - ${SILO_PORT}:8081 - command: --api + command: api volumes: - type: bind source: ${TESTSET_OUTPUT_FOLDER}/ @@ -32,7 +32,7 @@ services: siloPreprocessing: image: ghcr.io/genspectrum/lapis-silo:${SILO_TAG} - command: --preprocessing + command: preprocessing volumes: - type: bind source: ${TESTSET_OUTPUT_FOLDER}/ @@ -48,6 +48,6 @@ services: read_only: true - type: bind source: ${TESTSET_DATA_FOLDER}/database_config.yaml - target: /app/database_config.yaml + target: /preprocessing/input/database_config.yaml read_only: true stop_grace_period: 0s From b5300f02b8b6be032b72a61c665d0934deb74ef9 Mon Sep 17 00:00:00 2001 From: Fabian Engelniederhammer Date: Fri, 20 Dec 2024 08:36:05 +0100 Subject: [PATCH 2/2] fixup! fix: adapt SILO to 0.5.0 changes --- docker-compose.yml | 4 ---- 1 file changed, 4 deletions(-) diff --git a/docker-compose.yml b/docker-compose.yml index 1e2e2b8..20f9779 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -46,8 +46,4 @@ services: source: ${TESTSET_DATA_FOLDER}/preprocessing_config.yaml target: /app/preprocessing_config.yaml read_only: true - - type: bind - source: ${TESTSET_DATA_FOLDER}/database_config.yaml - target: /preprocessing/input/database_config.yaml - read_only: true stop_grace_period: 0s