NGS-pipelines

The standard and pipelines for GangCaoLab NGS data processing.

Include RNA-Seq, WGS(Resequencing), ATAC-Seq, ATAC-Seq, HiC strandard upstream processing pipeline. And the method, scripts, pipeline for downstream analyze.

RNA-Seq

mRNA expression level profile and differential analyze pipeline. Only for pair end library type.

ChIP-Seq

ATAC-Seq

HiC

DLO-HiC

Pipeline for DLO-HiC data analyze.

in-situ-HiC