Innereye: A stateful image processing toolkit for image-based SRT data analysis

Installation

1. Create conda environment

$ git clone --depth=1 https://github.com/GangCaoLab/InnerEye.git
$ cd InnerEye
$ conda env create -f environment.yml
$ conda activate innereye

2. Install SimpleElastix in the environment

see https://simpleelastix.readthedocs.io/GettingStarted.html

3. setup install

(innereye) $ python setup.py install