diff --git a/README.rst b/README.rst index 55d881e..90457ad 100644 --- a/README.rst +++ b/README.rst @@ -35,7 +35,7 @@ Attribution for software and data used by particular routines in this library is Installation ================== -Please view the `installation instructions `_ for details on how to install GalSim-Euclid-Like. +Please view the `Installation Instructions` for details on how to install GalSim-Euclid-Like. Downloading relevant data ================== @@ -57,7 +57,7 @@ Feel free to `open a GitHub issue `_. +This software is open source and may be used according to the terms of its `license `_. When using this software, please provide the URL to the repository in the resulting paper or note. Once there is a Zenodo DOI or journal article, this README will be updated and we will ask those using the code in their research to cite the relevant journal article. diff --git a/docs/_build/doctrees/environment.pickle b/docs/_build/doctrees/environment.pickle index d38556f..02dcc31 100644 Binary files a/docs/_build/doctrees/environment.pickle and b/docs/_build/doctrees/environment.pickle differ diff --git a/docs/_build/doctrees/euclidlike.doctree b/docs/_build/doctrees/euclidlike.doctree index a6e6f7e..c7f86cc 100644 Binary files a/docs/_build/doctrees/euclidlike.doctree and b/docs/_build/doctrees/euclidlike.doctree differ diff --git a/docs/_build/doctrees/euclidlike_imsim.doctree b/docs/_build/doctrees/euclidlike_imsim.doctree index f46c640..bdecdee 100644 Binary files a/docs/_build/doctrees/euclidlike_imsim.doctree and b/docs/_build/doctrees/euclidlike_imsim.doctree differ diff --git a/docs/_build/doctrees/examples.doctree b/docs/_build/doctrees/examples.doctree index f39ec92..9fcad1c 100644 Binary files a/docs/_build/doctrees/examples.doctree and b/docs/_build/doctrees/examples.doctree differ diff --git a/docs/_build/doctrees/index.doctree b/docs/_build/doctrees/index.doctree index 79b0e2b..acf96a0 100644 Binary files a/docs/_build/doctrees/index.doctree and b/docs/_build/doctrees/index.doctree differ diff --git a/docs/_build/doctrees/overview.doctree b/docs/_build/doctrees/overview.doctree index 6efbd28..0c67f04 100644 Binary files a/docs/_build/doctrees/overview.doctree and b/docs/_build/doctrees/overview.doctree differ diff --git a/docs/_build/doctrees/scripts.doctree b/docs/_build/doctrees/scripts.doctree index 37d1451..e65d9a2 100644 Binary files a/docs/_build/doctrees/scripts.doctree and b/docs/_build/doctrees/scripts.doctree differ diff --git a/docs/_build/html/.buildinfo b/docs/_build/html/.buildinfo index cbbaf3d..29a8242 100644 --- a/docs/_build/html/.buildinfo +++ b/docs/_build/html/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file records the configuration used when building these files. When it is not found, a full rebuild will be done. -config: 11d168bc3ba21763cf541d100b9a19c3 +config: ba953a8fd2dfc6098bff334f11b3d850 tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/docs/_build/html/_modules/euclidlike/backgrounds.html b/docs/_build/html/_modules/euclidlike/backgrounds.html index 82899f6..c0f3821 100644 --- a/docs/_build/html/_modules/euclidlike/backgrounds.html +++ b/docs/_build/html/_modules/euclidlike/backgrounds.html @@ -1,35 +1,77 @@ - - - - - - euclidlike.backgrounds — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - - - + + + + + + euclidlike.backgrounds — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + + +
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+ +
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+

Source code for euclidlike.backgrounds

 """
 This file includes any routines needed to define the background level, for which the main contribution (currently the only one implemented) is zodiacal light.
@@ -260,72 +302,31 @@ 
Source code for euclidlike.backgrounds
 
 

 
+
- -
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- -
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- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - -
- - - - - +
+
+ + + \ No newline at end of file diff --git a/docs/_build/html/_modules/euclidlike/bandpass.html b/docs/_build/html/_modules/euclidlike/bandpass.html index 76a7977..bb2da39 100644 --- a/docs/_build/html/_modules/euclidlike/bandpass.html +++ b/docs/_build/html/_modules/euclidlike/bandpass.html @@ -1,35 +1,77 @@ - - - - - - euclidlike.bandpass — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - - - + + + + + + euclidlike.bandpass — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + + +
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Source code for euclidlike.bandpass

 """
 @file bandpass.py
@@ -160,72 +202,31 @@ 
Source code for euclidlike.bandpass
     
 

 
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- -
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- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - -
- - - - - +
+
+ + + \ No newline at end of file diff --git a/docs/_build/html/_modules/euclidlike/euclidlike_psf.html b/docs/_build/html/_modules/euclidlike/euclidlike_psf.html index 3b5022b..cceb0ca 100644 --- a/docs/_build/html/_modules/euclidlike/euclidlike_psf.html +++ b/docs/_build/html/_modules/euclidlike/euclidlike_psf.html @@ -1,35 +1,77 @@ - - - - - - euclidlike.euclidlike_psf — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - - - + + + + + + euclidlike.euclidlike_psf — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + + +
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Source code for euclidlike.euclidlike_psf

 import os
 import galsim
@@ -408,72 +450,31 @@ 
Source code for euclidlike.euclidlike_psf
     return aper
 

 
+
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- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - -
- - - - - +
+
+ + + \ No newline at end of file diff --git a/docs/_build/html/_modules/euclidlike/euclidlike_wcs.html b/docs/_build/html/_modules/euclidlike/euclidlike_wcs.html index ae3388b..e39303f 100644 --- a/docs/_build/html/_modules/euclidlike/euclidlike_wcs.html +++ b/docs/_build/html/_modules/euclidlike/euclidlike_wcs.html @@ -1,35 +1,77 @@ - - - - - - euclidlike.euclidlike_wcs — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - - - + + + + + + euclidlike.euclidlike_wcs — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + + +
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Source code for euclidlike.euclidlike_wcs

 """
 @file euclidlike_wcs.py
@@ -666,72 +708,31 @@ 
Source code for euclidlike.euclidlike_wcs
     return obs_pa
 

 
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- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - -
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+ + + \ No newline at end of file diff --git a/docs/_build/html/_modules/euclidlike_imsim/bandpass.html b/docs/_build/html/_modules/euclidlike_imsim/bandpass.html index 5c34fef..c8eaf48 100644 --- a/docs/_build/html/_modules/euclidlike_imsim/bandpass.html +++ b/docs/_build/html/_modules/euclidlike_imsim/bandpass.html @@ -1,35 +1,77 @@ - - - - - - euclidlike_imsim.bandpass — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - - - + + + + + + euclidlike_imsim.bandpass — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + + +
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Source code for euclidlike_imsim.bandpass

 import euclidlike
 from galsim.config import BandpassBuilder, RegisterBandpassType, GetAllParams
@@ -73,72 +115,31 @@ 
Source code for euclidlike_imsim.bandpass
 RegisterBandpassType('EuclidlikeBandpassTrimmed', EuclidlikeBandpassBuilder())
 

 
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- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - -
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+ + + \ No newline at end of file diff --git a/docs/_build/html/_modules/euclidlike_imsim/ccd.html b/docs/_build/html/_modules/euclidlike_imsim/ccd.html index db285cb..1ef0981 100644 --- a/docs/_build/html/_modules/euclidlike_imsim/ccd.html +++ b/docs/_build/html/_modules/euclidlike_imsim/ccd.html @@ -1,35 +1,77 @@ - - - - - - euclidlike_imsim.ccd — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - - - + + + + + + euclidlike_imsim.ccd — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + + +
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Source code for euclidlike_imsim.ccd

 import galsim
 import galsim.config
@@ -260,72 +302,31 @@ 
Source code for euclidlike_imsim.ccd
 RegisterImageType("euclidlike_ccd", EuclidlikeCCDImageBuilder())
 

 
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- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - -
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+ + + \ No newline at end of file diff --git a/docs/_build/html/_modules/euclidlike_imsim/noise.html b/docs/_build/html/_modules/euclidlike_imsim/noise.html index 36a03a4..f317db3 100644 --- a/docs/_build/html/_modules/euclidlike_imsim/noise.html +++ b/docs/_build/html/_modules/euclidlike_imsim/noise.html @@ -1,35 +1,77 @@ - - - - - - euclidlike_imsim.noise — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - - - + + + + + + euclidlike_imsim.noise — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + + +
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Source code for euclidlike_imsim.noise

 import numpy as np
 
@@ -313,72 +355,31 @@ 
Source code for euclidlike_imsim.noise
 galsim.config.RegisterExtraOutput('weight_image', WeightImageBuilder())
 

 
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- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - -
- - - - - +
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+ + + \ No newline at end of file diff --git a/docs/_build/html/_modules/euclidlike_imsim/obseq.html b/docs/_build/html/_modules/euclidlike_imsim/obseq.html index 74ece02..2c6abae 100644 --- a/docs/_build/html/_modules/euclidlike_imsim/obseq.html +++ b/docs/_build/html/_modules/euclidlike_imsim/obseq.html @@ -1,35 +1,77 @@ - - - - - - euclidlike_imsim.obseq — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - - - + + + + + + euclidlike_imsim.obseq — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + + +
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Source code for euclidlike_imsim.obseq

 from astropy.time import Time
 import pandas as pd
@@ -156,72 +198,31 @@ 
Source code for euclidlike_imsim.obseq
 )
 

 
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- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - -
- - - - - +
+
+ + + \ No newline at end of file diff --git a/docs/_build/html/_modules/euclidlike_imsim/photonOps.html b/docs/_build/html/_modules/euclidlike_imsim/photonOps.html index e60a325..97e0f10 100644 --- a/docs/_build/html/_modules/euclidlike_imsim/photonOps.html +++ b/docs/_build/html/_modules/euclidlike_imsim/photonOps.html @@ -1,35 +1,77 @@ - - - - - - euclidlike_imsim.photonOps — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - - - + + + + + + euclidlike_imsim.photonOps — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + + +
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Source code for euclidlike_imsim.photonOps

 _w1 = 0.17519
 _w2 = 0.53146
@@ -123,72 +165,31 @@ 
Source code for euclidlike_imsim.photonOps
 RegisterPhotonOpType('ChargeDiff', ChargeDiffBuilder())
 

 
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- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - -
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+
+ + + \ No newline at end of file diff --git a/docs/_build/html/_modules/euclidlike_imsim/psf.html b/docs/_build/html/_modules/euclidlike_imsim/psf.html index 361ca93..bbb1dfc 100644 --- a/docs/_build/html/_modules/euclidlike_imsim/psf.html +++ b/docs/_build/html/_modules/euclidlike_imsim/psf.html @@ -1,35 +1,77 @@ - - - - - - euclidlike_imsim.psf — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - - - + + + + + + euclidlike_imsim.psf — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + + +
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Source code for euclidlike_imsim.psf

 import galsim
 import euclidlike
@@ -233,72 +275,31 @@ 
Source code for euclidlike_imsim.psf
 # RegisterObjectType('euclidlike_psf', BuildEuclidlikePSF, input_type='euclidlikepsf_loader')
 

 
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- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - -
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+ + + \ No newline at end of file diff --git a/docs/_build/html/_modules/euclidlike_imsim/skycat.html b/docs/_build/html/_modules/euclidlike_imsim/skycat.html index f31c627..15f44cc 100644 --- a/docs/_build/html/_modules/euclidlike_imsim/skycat.html +++ b/docs/_build/html/_modules/euclidlike_imsim/skycat.html @@ -1,35 +1,77 @@ - - - - - - euclidlike_imsim.skycat — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - - - + + + + + + euclidlike_imsim.skycat — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + + +
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Source code for euclidlike_imsim.skycat

 """
 Interface to obtain objects from skyCatalogs.
@@ -560,72 +602,31 @@ 
Source code for euclidlike_imsim.skycat
 )
 

 
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- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - -
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+ + + \ No newline at end of file diff --git a/docs/_build/html/_modules/euclidlike_imsim/stamp.html b/docs/_build/html/_modules/euclidlike_imsim/stamp.html index 00c4a59..6b473fb 100644 --- a/docs/_build/html/_modules/euclidlike_imsim/stamp.html +++ b/docs/_build/html/_modules/euclidlike_imsim/stamp.html @@ -1,35 +1,77 @@ - - - - - - euclidlike_imsim.stamp — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - - - + + + + + + euclidlike_imsim.stamp — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + + +
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Source code for euclidlike_imsim.stamp

 import numpy as np
 import galsim
@@ -383,72 +425,31 @@ 
Source code for euclidlike_imsim.stamp
 RegisterStampType('Euclidlike_stamp', Euclidlike_stamp())
 

 
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- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - -
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+ + + \ No newline at end of file diff --git a/docs/_build/html/_modules/euclidlike_imsim/utils.html b/docs/_build/html/_modules/euclidlike_imsim/utils.html index dfadbec..10ea3a0 100644 --- a/docs/_build/html/_modules/euclidlike_imsim/utils.html +++ b/docs/_build/html/_modules/euclidlike_imsim/utils.html @@ -1,35 +1,77 @@ - - - - - - euclidlike_imsim.utils — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - - - + + + + + + euclidlike_imsim.utils — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + + +
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Source code for euclidlike_imsim.utils

 import numpy as np
 import galsim
@@ -179,72 +221,31 @@ 
Source code for euclidlike_imsim.utils
 
 

 
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- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - -
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+ + + \ No newline at end of file diff --git a/docs/_build/html/_modules/euclidlike_imsim/wcs.html b/docs/_build/html/_modules/euclidlike_imsim/wcs.html index 9c8bdad..3467354 100644 --- a/docs/_build/html/_modules/euclidlike_imsim/wcs.html +++ b/docs/_build/html/_modules/euclidlike_imsim/wcs.html @@ -1,35 +1,77 @@ - - - - - - euclidlike_imsim.wcs — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - - - + + + + + + euclidlike_imsim.wcs — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + + +
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Source code for euclidlike_imsim.wcs

 from astropy.time import Time
 import galsim
@@ -98,72 +140,31 @@ 
Source code for euclidlike_imsim.wcs
 RegisterWCSType("EuclidlikeWCS", EuclidlikeWCS())
 

 
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- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - -
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+ + + \ No newline at end of file diff --git a/docs/_build/html/_modules/index.html b/docs/_build/html/_modules/index.html index 5eea8e7..b6efc7d 100644 --- a/docs/_build/html/_modules/index.html +++ b/docs/_build/html/_modules/index.html @@ -1,35 +1,76 @@ - - - - - - Overview: module code — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - - - + + + + + + Overview: module code — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + + +
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All modules for which code is available

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- - - - - + + + + + \ No newline at end of file diff --git a/docs/_build/html/_modules/scripts/download_psf.html b/docs/_build/html/_modules/scripts/download_psf.html index f4f4a05..23550bc 100644 --- a/docs/_build/html/_modules/scripts/download_psf.html +++ b/docs/_build/html/_modules/scripts/download_psf.html @@ -1,35 +1,77 @@ - - - - - - scripts.download_psf — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - - - + + + + + + scripts.download_psf — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + + +
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Source code for scripts.download_psf

 
 """
@@ -548,72 +590,31 @@ 
Source code for scripts.download_psf
 
 

 
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+ + + \ No newline at end of file diff --git a/docs/_build/html/_modules/scripts/make_euclidlike_pupil_plane.html b/docs/_build/html/_modules/scripts/make_euclidlike_pupil_plane.html index 39caf0c..900ebc5 100644 --- a/docs/_build/html/_modules/scripts/make_euclidlike_pupil_plane.html +++ b/docs/_build/html/_modules/scripts/make_euclidlike_pupil_plane.html @@ -1,35 +1,77 @@ - - - - - - scripts.make_euclidlike_pupil_plane — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - - - + + + + + + scripts.make_euclidlike_pupil_plane — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + + +
+ + +
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Source code for scripts.make_euclidlike_pupil_plane

 """
 This code has been taken from https://github.com/CosmoStat/wf-psf Liaudat et al.
@@ -224,72 +266,31 @@ 
Source code for scripts.make_euclidlike_pupil_plane
print(f"Pupil plane saved at: {output_path}")
+
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-
- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - -
- - - - - + + + + + \ No newline at end of file diff --git a/docs/_build/html/_sources/examples.rst.txt b/docs/_build/html/_sources/examples.rst.txt index 07f898e..4c3fe96 100644 --- a/docs/_build/html/_sources/examples.rst.txt +++ b/docs/_build/html/_sources/examples.rst.txt @@ -6,9 +6,9 @@ The ``GalSim-Euclid-Like/examples`` directory contains example files for how use End-to-end demo --------------- -`end_to_end_demo.py.py <../examples/end_to_end_demo.py>`_ +:gh-link:`end_to_end_demo.py ` -This first demo is the euclidlike-equivalent of `demo 13 `_ in ``GalSim``. This demo uses the Euclid-like PSF, WCS, and background noise to produce a realistic scene of galaxies and stars as observed from a Euclid-like Telescope. +This first demo is the euclidlike-equivalent of _`demo 13 `_ in ``GalSim``. This demo uses the Euclid-like PSF, WCS, and background noise to produce a realistic scene of galaxies and stars as observed from a Euclid-like Telescope. ** Features introduced in the Python file**: @@ -17,13 +17,12 @@ This first demo is the euclidlike-equivalent of `demo 13 `_ +The output generated from this file can be visualized by running the script :gh-link:`plot_VIS.py `. Focal Plane Layout ------------------ - -`plot_VIS.py <../examples/plot_VIS.py>`_ +:gh-link:`focal_plane_layout.ipynb ` This Jupyter Notebook shows the display of the focal plane used in the euclidlike package, along with the CCD centers and ID convention. diff --git a/docs/_build/html/_sources/index.rst.txt b/docs/_build/html/_sources/index.rst.txt index 3f160f3..7ba41af 100644 --- a/docs/_build/html/_sources/index.rst.txt +++ b/docs/_build/html/_sources/index.rst.txt @@ -1,7 +1,7 @@ .. 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+ } + const versionSelect = ` + + `; + + versionSwitch.innerHTML = versionSelect; + versionSwitch.firstElementChild.addEventListener("change", onSelectorSwitch); + } + + const languageSwitch = document.querySelector( + "div.switch-menus > div.language-switch", + ); + + if (themeLanguageSelector) { + if (config.projects.translations.length) { + // Add the current language to the options on the selector + let languages = config.projects.translations.concat( + config.projects.current, + ); + languages = languages.sort((a, b) => + a.language.name.localeCompare(b.language.name), + ); + + const languageSelect = ` + + `; + + languageSwitch.innerHTML = languageSelect; + languageSwitch.firstElementChild.addEventListener("change", onSelectorSwitch); + } + else { + languageSwitch.remove(); + } + } + }); +} + +document.addEventListener("readthedocs-addons-data-ready", function (event) { + // Trigger the Read the Docs Addons Search modal when clicking on "Search docs" input from the topnav. + document + .querySelector("[role='search'] input") + .addEventListener("focusin", () => { + const event = new CustomEvent("readthedocs-search-show"); 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+ + +
+ +
+
+
+ +
+
+
+
+
-

The Euclid-like Module

+

The Euclid-like Module

The euclidlike module contains telescope information and functionality needed for image simulations. The demo script end_to_end_demo.py shows how to use many of the atrributes and functions described here.

-

Module-level Attributes

+

Module-level Attributes

There are several of attributes of the euclidlike module which define some numerical parameters related to a Euclid-like geometry. Some of these parameters relate to the entire wide-field imager. Others, especially the return values of the functions to get the @@ -113,33 +167,33 @@

Module-level Attributes

-

Euclid-like Functions

+

Euclid-like Functions

This module also contains the following routines:

-
euclidlike.getBandpasses

A utility to get a dictionary containing galsim.Bandpass objects for each of +

euclidlike.getBandpasses

A utility to get a dictionary containing galsim.Bandpass objects for each of the Euclid-like imaging bandpasses, which by default have AB zeropoints given using -the GalSim zeropoint convention (see getBandpasses docstring for more details).

+the GalSim zeropoint convention (see getBandpasses docstring for more details).

-
euclidlike.getSkyLevel

A utility to find the expected sky level due to zodiacal light at a given +

euclidlike.getSkyLevel

A utility to find the expected sky level due to zodiacal light at a given position, in a given band.

-
euclidlike.getZodiBackground

This helper routine is enables the calculation of the zodiacal light, in photons/m^2/arcsec^2/sec

+
euclidlike.getZodiBackground

This helper routine is enables the calculation of the zodiacal light, in photons/m^2/arcsec^2/sec

-
euclidlike.getPSF

A routine to get a chromatic representation of the PSF in a single CCD. +

euclidlike.getPSF

A routine to get a chromatic representation of the PSF in a single CCD. PSFs are based on precomputed, oversampled (by 3x) PSF images on a grid in wavelength and focal plane position.

-
euclidlike.getBrightPSF

Get a fake optical PSF for very bright objects.

+
euclidlike.getBrightPSF

Get a fake optical PSF for very bright objects.

-
euclidlike.getWCS

This routine returns a dict containing a WCS for each of the Euclid CCDs.

+
euclidlike.getWCS

This routine returns a dict containing a WCS for each of the Euclid CCDs.

-
euclidlike.findCCD

This is a helper routine to calculate the minimum and maximum pixel values that should be +

euclidlike.findCCD

This is a helper routine to calculate the minimum and maximum pixel values that should be considered within a CCD.

-euclidlike.getBandpasses(AB_zeropoint=True, default_thin_trunc=True, full_bandpass=False, **kwargs)[source]
+euclidlike.getBandpasses(AB_zeropoint=True, default_thin_trunc=True, full_bandpass=False, **kwargs)[source]

Function to get the bandpass information for the Euclid VIS band and the three Euclid NISP passbands.

This routine reads in files containing a list of wavelengths and transmission values for the Euclid bands. The files are located in the @@ -163,12 +217,12 @@

Euclid-like Functions

calculations. [default: False]

-

kwargs : Additional keyword arguments to pass to either Bandpass.thin or Bandpass.truncate.

+

kwargs : Additional keyword arguments to pass to either Bandpass.thin or Bandpass.truncate.

-euclidlike.getSkyLevel(bandpass, world_pos=None, exptime=None, epoch=2025, date=None)[source]
+euclidlike.getSkyLevel(bandpass, world_pos=None, exptime=None, epoch=2025, date=None)[source]

Get the expected sky level for a Euclid observation due to zodiacal light for this bandpass and position.

This routine can take an arbitray galsim.Bandpass() and calculate the zodiacal background @@ -210,7 +264,7 @@

Euclid-like Functions
-euclidlike.getPSF(ccd, bandpass, ccd_pos=None, wcs=None, wavelength=None, gsparams=None, logger=None, psf_dir=None)[source]
+euclidlike.getPSF(ccd, bandpass, ccd_pos=None, wcs=None, wavelength=None, gsparams=None, logger=None, psf_dir=None)[source]

Get a single PSF for a Euclid-like simulation.

These PSFs are based on precomputed, oversampled (by 3x) PSF images on a grid in wavelength and focal plane position. These images were provided by Lance Miller and Chris Duncan. They are @@ -234,17 +288,17 @@

Euclid-like FunctionsFunctionally the lack of non-linear detector effects means the images produced should be thought of as post-instrument signature removal (assuming the ISR process is carried out perfectly).

For applications that require very high accuracy in the modeling of the PSF, with very limited -aliasing, you may want to lower the folding_threshold in the gsparams. Otherwise very bright +aliasing, you may want to lower the folding_threshold in the gsparams. Otherwise very bright stars will show some reflections in the spider pattern and possibly some boxiness at the outskirts of the PSF due to the size of the precomputed images. Using gsparams = GSParams(folding_threshold=1.e-4) generally provides good results.

The PSF model is constructed from oversampled images accross the focal plane. Therefore, in order to use allow for a spatially varying PSF, the images must be downloaded before using this function. This can be done using the terminal -command euclidlike_download_psf. The images are sampled at the 4 quadrant +command euclidlike_download_psf. The images are sampled at the 4 quadrant centers of each CCD and at 17 discrete wavelengths. If the images are not downloaded, the function will default to use the PSF from a default CCD quadrant, without any spatial variation. -The ccd argument refers to the detector ID (integer between 0-35), +The ccd argument refers to the detector ID (integer between 0-35), not the focal plane position (in format column-row). The sampled PSF images are stored using the focal plane position format. Therefore, we convert the CCD detector ID to the appropiate focal plane position @@ -290,7 +344,7 @@

Euclid-like Functions
-euclidlike.getBrightPSF(ccd, bandpass, ccd_pos=None, pupil_bin=4, wcs=None, n_waves=None, wavelength=None, gsparams=None, logger=None)[source]
+euclidlike.getBrightPSF(ccd, bandpass, ccd_pos=None, pupil_bin=4, wcs=None, n_waves=None, wavelength=None, gsparams=None, logger=None)[source]

Get a fake optical PSF for very bright objects in Euclid-like simulations. Depending on the inputs, this routine returns a chromatic or achromatic PSF using the Euclid telescope diameter and Euclid-like aperture.

@@ -311,7 +365,7 @@

Euclid-like Functionsn_waves (int): Number of wavelengths to use for setting up interpolation of the

chromatic PSF objects, which can lead to much faster image rendering. If None, then no interpolation is used. Note that users who want to interpolate can always set up the interpolation -later on even if they do not do so when calling getPSF. +later on even if they do not do so when calling getPSF. [default: None]

wavelength (float): An option to get an achromatic PSF for a single

wavelength, for users who do not care about chromaticity of the PSF. If @@ -335,7 +389,7 @@

Euclid-like Functions
-euclidlike.getWCS(world_pos, PA=None, date=None, CCDs=None, PA_is_FPA=False, SAA=None)[source]
+euclidlike.getWCS(world_pos, PA=None, date=None, CCDs=None, PA_is_FPA=False, SAA=None)[source]

This routine returns a dict containing a WCS for each of the Euclid CCDs. The Euclid CCDs are labeled 0-35, so these numbers are used as the keys in the dict. Alternatively the user can request a subset of the CCDs using @@ -354,12 +408,12 @@

Euclid-like Functions
Parameters:
@@ -391,7 +445,7 @@

Euclid-like Functions
-euclidlike.findCCD(wcs_dict, world_pos, include_border=False)[source]
+euclidlike.findCCD(wcs_dict, world_pos, include_border=False)[source]

This is a subroutine to take a dict of WCS (one per CCD) from euclidlike.getWCS() and query which CCD a particular real-world coordinate would be located on. The position (world_pos) should be specified as a galsim.CelestialCoord. If the position is not located on any of the @@ -425,79 +479,34 @@

Euclid-like Functions +

- -
-
- -
- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - - | - Page source -
- - - - - +
+
+ + + \ No newline at end of file diff --git a/docs/_build/html/euclidlike_imsim.html b/docs/_build/html/euclidlike_imsim.html index e6d31e5..89c9957 100644 --- a/docs/_build/html/euclidlike_imsim.html +++ b/docs/_build/html/euclidlike_imsim.html @@ -1,47 +1,183 @@ + + + + + + + + The Euclid-like ImSim Module — GalSim-Euclid-Like 0.0.1 documentation + + - - - - - - The Euclid-like ImSim Module — GalSim-Euclid-Like 0.0.1 documentation - - - - - - + + + + + + + - - - - + + - - - - - + +
+ + +
+ +
+
+
+ +
+
+
+
+
-

The Euclid-like ImSim Module

+

The Euclid-like ImSim Module

This module contains configuration scripts to produce large-scale Euclid-like simulation runs based on the information in euclidlike. It is based heavily on roman_imsim.

-

Classes and Functions

+

Classes and Functions

-class euclidlike_imsim.bandpass.EuclidlikeBandpassBuilder[source]
+class euclidlike_imsim.bandpass.EuclidlikeBandpassBuilder[source]

A class for loading a Bandpass from a file

FileBandpass expected the following parameter:

@@ -49,7 +185,7 @@

The Euclid-like ImSim Module
-buildBandpass(config, base, logger)[source]
+buildBandpass(config, base, logger)[source]

Build the Bandpass based on the specifications in the config dict.

Parameters:
@@ -69,10 +205,10 @@

The Euclid-like ImSim Module
-class euclidlike_imsim.ccd.EuclidlikeCCDImageBuilder[source]
+class euclidlike_imsim.ccd.EuclidlikeCCDImageBuilder[source]
-addNoise(image, config, base, image_num, obj_num, current_var, logger)[source]
+addNoise(image, config, base, image_num, obj_num, current_var, logger)[source]

Add the final noise to a Scattered image

Parameters:
@@ -91,7 +227,7 @@

The Euclid-like ImSim Module
-buildImage(config, base, image_num, obj_num, logger)[source]
+buildImage(config, base, image_num, obj_num, logger)[source]

Build an Image containing multiple objects placed at arbitrary locations.

Parameters:
@@ -111,7 +247,7 @@

The Euclid-like ImSim Module
-setup(config, base, image_num, obj_num, ignore, logger)[source]
+setup(config, base, image_num, obj_num, ignore, logger)[source]

Do the initialization and setup for building the image.

This figures out the size that the image will be, but doesn’t actually build it yet.

@@ -136,10 +272,10 @@

The Euclid-like ImSim Module
-class euclidlike_imsim.noise.NoiseImageBuilder[source]
+class euclidlike_imsim.noise.NoiseImageBuilder[source]
-initialize(data, scratch, config, base, logger)[source]
+initialize(data, scratch, config, base, logger)[source]

Do any initial setup for this builder at the start of a new output file.

The base class implementation saves two work space items into self.data and self.scratch that can be used to safely communicate across multiple processes.

@@ -158,7 +294,7 @@

The Euclid-like ImSim Module
-processImage(index, obj_nums, config, base, logger)[source]
+processImage(index, obj_nums, config, base, logger)[source]

Perform any necessary processing at the end of each image construction.

This function will be called after each full image is built.

Compute the noise for the current image and add it to the image. @@ -184,10 +320,10 @@

The Euclid-like ImSim Module
-class euclidlike_imsim.noise.SkyImageBuilder[source]
+class euclidlike_imsim.noise.SkyImageBuilder[source]
-processImage(index, obj_nums, config, base, logger)[source]
+processImage(index, obj_nums, config, base, logger)[source]

Perform any necessary processing at the end of each image construction.

This function will be called after each full image is built.

Compute the sky background and return it in an image.

@@ -211,10 +347,10 @@

The Euclid-like ImSim Module
-class euclidlike_imsim.noise.WeightImageBuilder[source]
+class euclidlike_imsim.noise.WeightImageBuilder[source]
-processImage(index, obj_nums, config, base, logger)[source]
+processImage(index, obj_nums, config, base, logger)[source]

Perform any necessary processing at the end of each image construction.

This function will be called after each full image is built.

Compute the weight map from the noise image and return it in an image.

@@ -238,32 +374,32 @@

The Euclid-like ImSim Module
-euclidlike_imsim.noise.get_noise(cfg_noise, cfg_image, base, logger)[source]
+euclidlike_imsim.noise.get_noise(cfg_noise, cfg_image, base, logger)[source]

-euclidlike_imsim.noise.parse_noise_config(params)[source]
+euclidlike_imsim.noise.parse_noise_config(params)[source]
-euclidlike_imsim.obseq.ObSeqData(config, base, value_type)[source]
+euclidlike_imsim.obseq.ObSeqData(config, base, value_type)[source]

Returns the obseq data for a pointing.

-class euclidlike_imsim.obseq.ObSeqDataLoader(file_name, visit, obs_kind, CCD, logger=None)[source]
+class euclidlike_imsim.obseq.ObSeqDataLoader(file_name, visit, obs_kind, CCD, logger=None)[source]

Read the exposure information from the observation sequence.

-get(field, default=None, obs_kind=None)[source]
+get(field, default=None, obs_kind=None)[source]
-read_obseq()[source]
+read_obseq()[source]

Read visit info from the obseq file.

@@ -271,17 +407,17 @@

The Euclid-like ImSim Module
-class euclidlike_imsim.photonOps.ChargeDiff(rng=None, **kwargs)[source]
+class euclidlike_imsim.photonOps.ChargeDiff(rng=None, **kwargs)[source]

A photon operator that applies the effect of charge diffusion via a probablistic model limit.

-applyTo(photon_array, local_wcs=None, rng=None)[source]
+applyTo(photon_array, local_wcs=None, rng=None)[source]

Apply the charge diffusion effect to the photons

Parameters:
    -

  • photon_array – A PhotonArray to apply the operator to.

    • -

  • local_wcs – A LocalWCS instance defining the local WCS for the current photon +

  • photon_array – A PhotonArray to apply the operator to.

    • +

  • local_wcs – A LocalWCS instance defining the local WCS for the current photon bundle in case the operator needs this information. [default: None]

  • rng – A random number generator to use if needed. [default: None]

@@ -293,11 +429,11 @@

The Euclid-like ImSim Module
-class euclidlike_imsim.photonOps.ChargeDiffBuilder[source]
+class euclidlike_imsim.photonOps.ChargeDiffBuilder[source]

Build ChargeDiff photonOp

-buildPhotonOp(config, base, logger)[source]
+buildPhotonOp(config, base, logger)[source]

Build the PhotonOp based on the specifications in the config dict.

Note: Sub-classes must override this function with a real implementation.

@@ -318,11 +454,11 @@

The Euclid-like ImSim Module
-class euclidlike_imsim.psf.EuclidlikePSF(CCD=None, WCS=None, n_waves=None, bpass=None, extra_aberrations=None, logger=None)[source]
+class euclidlike_imsim.psf.EuclidlikePSF(CCD=None, WCS=None, n_waves=None, bpass=None, extra_aberrations=None, logger=None)[source]

Class building needed Euclidlike PSFs.

-getPSF(pupil_bin, pos)[source]
+getPSF(pupil_bin, pos)[source]

Return a PSF to be convolved with sources. PSF is sampled at 4 quadrants for each CCD. Returned PSF corresponds to that of the quadrant of the CCD position.

@@ -333,11 +469,11 @@

The Euclid-like ImSim Module
-class euclidlike_imsim.psf.PSFLoader[source]
+class euclidlike_imsim.psf.PSFLoader[source]

PSF loader.

-getKwargs(config, base, logger)[source]
+getKwargs(config, base, logger)[source]

Parse the config dict and return the kwargs needed to build the input object.

The default implementation looks for special class attributes called:

@@ -374,36 +510,36 @@

The Euclid-like ImSim ModuleInterface to obtain objects from skyCatalogs.

-euclidlike_imsim.skycat.SkyCatObj(config, base, ignore, gsparams, logger)[source]
+euclidlike_imsim.skycat.SkyCatObj(config, base, ignore, gsparams, logger)[source]

Build an object according to info in the sky catalog.

-euclidlike_imsim.skycat.SkyCatValue(config, base, value_type)[source]
+euclidlike_imsim.skycat.SkyCatValue(config, base, value_type)[source]

Return a value from the object part of the skyCatalog

-euclidlike_imsim.skycat.SkyCatWorldPos(config, base, value_type)[source]
+euclidlike_imsim.skycat.SkyCatWorldPos(config, base, value_type)[source]

Return a value from the object part of the skyCatalog

-class euclidlike_imsim.skycat.SkyCatalogInterface(file_name, exptime, wcs=None, mjd=None, bandpass=None, xsize=None, ysize=None, obj_types=None, edge_pix=100, max_flux=None, logger=None)[source]
+class euclidlike_imsim.skycat.SkyCatalogInterface(file_name, exptime, wcs=None, mjd=None, bandpass=None, xsize=None, ysize=None, obj_types=None, edge_pix=100, max_flux=None, logger=None)[source]

Interface to skyCatalogs package.

-getApproxNObjects()[source]
+getApproxNObjects()[source]

Return the approximate number of GSObjects to render, as set in the class initializer.

-getFlux(index, filter=None, mjd=None, exptime=None)[source]
+getFlux(index, filter=None, mjd=None, exptime=None)[source]

Return the flux associated to an object.

Parameters:
@@ -429,13 +565,13 @@

The Euclid-like ImSim Module
-getNObjects()[source]
+getNObjects()[source]

Return the number of GSObjects to render

-getObj(index, gsparams=None, rng=None, exptime=30)[source]
+getObj(index, gsparams=None, rng=None, exptime=30)[source]

Return the galsim object for the skyCatalog object corresponding to the specified index. If the skyCatalog object is a galaxy, the returned galsim object will be @@ -452,7 +588,7 @@

The Euclid-like ImSim Module
-getValue(index, field)[source]
+getValue(index, field)[source]

Return a skyCatalog value for the an object.

Parameters:
@@ -472,7 +608,7 @@

The Euclid-like ImSim Module
-getWorldPos(index)[source]
+getWorldPos(index)[source]

Return the sky coordinates of the skyCatalog object corresponding to the specified index.

@@ -487,24 +623,24 @@

The Euclid-like ImSim Module
-get_ccd_center()[source]
+get_ccd_center()[source]

Return the CCD center.

-property objects
+property objects

-class euclidlike_imsim.skycat.SkyCatalogLoader(init_func, has_nobj=False, file_scope=False, takes_logger=False, use_proxy=True, worker_init=None, worker_initargs=None)[source]
+class euclidlike_imsim.skycat.SkyCatalogLoader(init_func, has_nobj=False, file_scope=False, takes_logger=False, use_proxy=True, worker_init=None, worker_initargs=None)[source]

Class to load SkyCatalogInterface object.

-getKwargs(config, base, logger)[source]
+getKwargs(config, base, logger)[source]

Parse the config dict and return the kwargs needed to build the input object.

The default implementation looks for special class attributes called:

@@ -540,13 +676,13 @@

The Euclid-like ImSim Module
-class euclidlike_imsim.stamp.Euclidlike_stamp[source]
+class euclidlike_imsim.stamp.Euclidlike_stamp[source]

This performs the tasks necessary for building the stamp for a single object.

It uses the regular Basic functions for most things. It specializes the quickSkip, buildProfile, and draw methods.

-buildPSF(config, base, gsparams, logger)[source]
+buildPSF(config, base, gsparams, logger)[source]

Build the PSF object.

For the Basic stamp type, this builds a PSF from the base[‘psf’] dict, if present, else returns None.

@@ -568,7 +704,7 @@

The Euclid-like ImSim Module
-draw(prof, image, method, offset, config, base, logger)[source]
+draw(prof, image, method, offset, config, base, logger)[source]

Draw the profile on the postage stamp image.

Parameters:
@@ -590,12 +726,12 @@

The Euclid-like ImSim Module
-classmethod fix_seds(prof, bandpass)[source]
+classmethod fix_seds(prof, bandpass)[source]

-getDrawMethod(config, base, logger)[source]
+getDrawMethod(config, base, logger)[source]

Determine the draw method to use.

@param config The configuration dict for the stamp field. @param base The base configuration dict. @@ -605,7 +741,7 @@

The Euclid-like ImSim Module
-setup(config, base, xsize, ysize, ignore, logger)[source]
+setup(config, base, xsize, ysize, ignore, logger)[source]

Do the initialization and setup for building a postage stamp.

In the base class, we check for and parse the appropriate size and position values in config (aka base[‘stamp’] or base[‘image’].

@@ -634,28 +770,28 @@

The Euclid-like ImSim Module
-class euclidlike_imsim.utils.roman_utils(config_file, visit=None, sca=None, image_name=None, setup_skycat=False)[source]
+class euclidlike_imsim.utils.roman_utils(config_file, visit=None, sca=None, image_name=None, setup_skycat=False)[source]

Class to contain a variety of helper routines to work with the simulation data.

-check_input(visit, sca, image_name)[source]
+check_input(visit, sca, image_name)[source]
-getBandpass()[source]
+getBandpass()[source]

Return Roman bandpass for image

-getLocalWCS(x, y)[source]
+getLocalWCS(x, y)[source]

Return Roman WCS for image

-getPSF(x=None, y=None, pupil_bin=8)[source]
+getPSF(x=None, y=None, pupil_bin=8)[source]

Return Roman PSF for some image position. :param x: x-position in SCA :param y: y-position in SCA @@ -669,7 +805,7 @@

The Euclid-like ImSim Module
-getPSF_Image(stamp_size, x=None, y=None, pupil_bin=8, sed=None, oversampling_factor=1, include_photonOps=False, n_phot=1000000.0)[source]
+getPSF_Image(stamp_size, x=None, y=None, pupil_bin=8, sed=None, oversampling_factor=1, include_photonOps=False, n_phot=1000000.0)[source]

Return a Roman PSF image for some image position :param stamp_size: size of output PSF model stamp in native roman pixel_scale (oversampling_factor=1) :param x: x-position in SCA @@ -687,7 +823,7 @@

The Euclid-like ImSim Module
-getWCS()[source]
+getWCS()[source]

Return Roman WCS for image

@@ -695,10 +831,10 @@

The Euclid-like ImSim Module
-class euclidlike_imsim.wcs.EuclidlikeWCS[source]
+class euclidlike_imsim.wcs.EuclidlikeWCS[source]
-buildWCS(config, base, logger)[source]
+buildWCS(config, base, logger)[source]

Build the WCS based on the specifications in the config dict.

Note: Sub-classes must override this function with a real implementation.

@@ -719,11 +855,11 @@

The Euclid-like ImSim Module -

Use

+

Use

Example files needed for large-scale Euclid-like simulation runs are included in GalSim-Euclid-Like/config.

-

Config imsim

+

Config imsim

was.yaml: euclidlike_imsim example config file. You will want to update the following entries:

-
- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - - | - Page source -
- - - - - +
+
+ + + \ No newline at end of file diff --git a/docs/_build/html/examples.html b/docs/_build/html/examples.html index 4fd9454..a02b1ae 100644 --- a/docs/_build/html/examples.html +++ b/docs/_build/html/examples.html @@ -1,45 +1,91 @@ + + + + + - - - - - - Examples — GalSim-Euclid-Like 0.0.1 documentation - - - - - - + + Examples — GalSim-Euclid-Like 0.0.1 documentation + + + + + + + + + + - - - - - - - + + - - + +
+ + +
+ +
+
+
+ +
+
+
+
+
-

Examples

+

Examples

The GalSim-Euclid-Like/examples directory contains example files for how use the euclidlike module.

-

End-to-end demo

-

end_to_end_demo.py.py

-

This first demo is the euclidlike-equivalent of demo 13 in GalSim. This demo uses the Euclid-like PSF, WCS, and background noise to produce a realistic scene of galaxies and stars as observed from a Euclid-like Telescope.

+

End-to-end demo

+

end_to_end_demo.py

+

This first demo is the euclidlike-equivalent of demo 13 <https://github.com/GalSim-developers/GalSim/blob/main/examples/demo13.py>`_ in ``GalSim`. This demo uses the Euclid-like PSF, WCS, and background noise to produce a realistic scene of galaxies and stars as observed from a Euclid-like Telescope.

** Features introduced in the Python file**:

  • euclidlike.getBandpasses(AB_zeropoint)

    • @@ -47,89 +93,44 @@

    End-to-end demoend_to_end_demo.py.py

    +

    The output generated from this file can be visualized by running the script plot_VIS.py .

-

Focal Plane Layout

-

plot_VIS.py

+

Focal Plane Layout

+

focal_plane_layout.ipynb

This Jupyter Notebook shows the display of the focal plane used in the euclidlike package, along with the CCD centers and ID convention.

+
- -
-
- -
- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - - | - Page source -
- - - - - +
+
+ + + \ No newline at end of file diff --git a/docs/_build/html/genindex.html b/docs/_build/html/genindex.html index 5f05424..51cf58e 100644 --- a/docs/_build/html/genindex.html +++ b/docs/_build/html/genindex.html @@ -1,35 +1,76 @@ - - - - - - Index — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - - - + + + + + + Index — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + + +
+ + +
+ +
+
+
+
    +
    • +
  • Index
    • +
  • +
    • +
+
+
+
+
+

Index

@@ -467,70 +508,31 @@

W

+
- -
-
- -
-
-
- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - -
- - - - - + +
+ + + \ No newline at end of file diff --git a/docs/_build/html/history.html b/docs/_build/html/history.html index 9f69abb..c729276 100644 --- a/docs/_build/html/history.html +++ b/docs/_build/html/history.html @@ -1,77 +1,47 @@ + + + + + - - - - - - Revision History — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - - + + Revision History — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + - - + +
+ + +
+ +
+
+
+ +
+
+
+
+ +
+

Revision History

+
+

Changes from v0.0.0 to v0.0.1

+

Made repo public.

+
+
+

Older Versions

+
+
+
+
+
+
+
+
+
+

© Copyright 2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang.

+
+ Built with Sphinx using a + theme + provided by Read the Docs. + +
-
-
-
- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - - | - Page source -
- - - - - + + + + + \ No newline at end of file diff --git a/docs/_build/html/index.html b/docs/_build/html/index.html index 73125c7..c449152 100644 --- a/docs/_build/html/index.html +++ b/docs/_build/html/index.html @@ -1,39 +1,81 @@ + + + + + - - - - - - GalSim-Euclid-Like: Euclid-like images using GalSim — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - - + + GalSim-Euclid-Like: Euclid-like images using GalSim. — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + - - + +
+ + +
+ +
+
+
+ +
+
+
+
+
-

GalSim-Euclid-Like: Euclid-like images using GalSim

+

GalSim-Euclid-Like: Euclid-like images using GalSim.

  • Overview
      @@ -76,7 +118,7 @@

      GalSim-Euclid-Like: Euclid-like images using GalSim

-

Indices and tables

+

Indices and tables

-
- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - - | - Page source -
- - - - - +
+
+ + + \ No newline at end of file diff --git a/docs/_build/html/install.html b/docs/_build/html/install.html index 11726e8..172df17 100644 --- a/docs/_build/html/install.html +++ b/docs/_build/html/install.html @@ -1,47 +1,96 @@ + + + + + - - - - - - Installation — GalSim-Euclid-Like 0.0.1 documentation - - - - - - + + Installation — GalSim-Euclid-Like 0.0.1 documentation + + + + + + + + + + - - - - + + - - + +
+ + +
+ +
+
+
+ +
+
+
+
+
-

Installation

+

Installation

-

Installation Instructions

+

Installation Instructions

The GalSim-Euclid-Like repository contains two python libraries and currently supports Python versions 3.10 and above.

System requirements: Given the heavy dependance on GalSim, GalSim-Euclid-Like currently only supports Linux and Mac OSX. For further details on system requirements for GalSim see GalSim Installation.

-

Dependencies

+

Dependencies

GalSim-Euclid-Like requires python>=3.10 and the following dependencies:

numpy>=1.17,
 galsim>=2.6,
@@ -50,7 +99,7 @@ 
Dependencies
-
Installation

+
Installation

 
The source code for GalSim-Euclid-Like has not been published to pypi. To install from source code:

 
git clone git@github.com:GalSim-developers/GalSim-Euclid-Like.git
 

@@ -73,78 +122,34 @@ 
Installation
+
- -
-
- -
- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - - | - Page source -
- - - - - +
+
+ + + \ No newline at end of file diff --git a/docs/_build/html/modules.html b/docs/_build/html/modules.html index b8967d7..e2fea18 100644 --- a/docs/_build/html/modules.html +++ b/docs/_build/html/modules.html @@ -1,36 +1,78 @@ + + + + + - - - - - - <no title> — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - + + <no title> — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + - - + +
+ + +
+ +
+
+
+ +
+
+
+
+
+
- -
-
- -
-
-
- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - - | - Page source -
- - - - - + + + + + \ No newline at end of file diff --git a/docs/_build/html/objects.inv b/docs/_build/html/objects.inv index 24e0d91..e6ba275 100644 Binary files a/docs/_build/html/objects.inv and b/docs/_build/html/objects.inv differ diff --git a/docs/_build/html/overview.html b/docs/_build/html/overview.html index 47dd1b5..01e93cc 100644 --- a/docs/_build/html/overview.html +++ b/docs/_build/html/overview.html @@ -1,42 +1,93 @@ + + + + + + + + Overview — GalSim-Euclid-Like 0.0.1 documentation + + - - - - - - Overview — GalSim-Euclid-Like 0.0.1 documentation - - - - - - + + + + + + + - - - - - - - + + - - + +
+ + +
+ +
+
+
+ +
+
+
+
+
-

Overview

+

Overview

-

GalSim-Euclid-Like

+

GalSim-Euclid-Like

Helper functions to generate simulations of Euclid-like images using GalSim.

This repository contains information about the Euclid space telescope and survey that is needed to produce simulations using GalSim. Some of the @@ -57,17 +108,17 @@

GalSim-Euclid-Like -

References

+

References

For more information about GalSim, please see its README and documentation.

For more information about Euclid, please see the Euclid Consortium website and papers linked from there.

Attribution for software and data used by particular routines in this library is given in the docstring for the relevant routine.

-

Installation

-

Please view the installation instructions for details on how to install GalSim-Euclid-Like.

+

Installation

+

Please view the Installation Instructions for details on how to install GalSim-Euclid-Like.

-

Downloading relevant data

+

Downloading relevant data

The Euclid-like PSF is constructed from precomputed oversampled images on a grid in focal plane position and wavelength. To use the full FOV PSF within GalSim-Euclid-Like, the images must be downloaded by running:

$ euclidlike_download_psf
@@ -75,99 +126,49 @@

Downloading relevant data--dir argument. Refer to the getPSF documentation for further details about the PSF.

-

Getting started

+

Getting started

Please see the examples/ directory for demos illustrating the use of this code.

-

Communicating with the developers

+

Communicating with the developers

Feel free to open a GitHub issue to reach the developers with questions, comments, and bug reports. New contributors are also welcome and can indicate their interest in developing this code base through the Issues.

-

Attribution

-

This software is open source and may be used according to the terms of its license.

+

Attribution

+

This software is open source and may be used according to the terms of its license.

When using this software, please provide the URL to the repository in the resulting paper or note. Once there is a Zenodo DOI or journal article, this README will be updated and we will ask those using the code in their research to cite the relevant journal article.

+
- -
-
- -
- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - - | - Page source -
- - - - - +
+
+ + + \ No newline at end of file diff --git a/docs/_build/html/py-modindex.html b/docs/_build/html/py-modindex.html index 9330300..95ceec2 100644 --- a/docs/_build/html/py-modindex.html +++ b/docs/_build/html/py-modindex.html @@ -1,38 +1,79 @@ - - - - - - Python Module Index — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - + + + + + + Python Module Index — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + + - - + +
+ + +
+ +
+
+
+
    +
    • +
  • Python Module Index
    • +
  • +
    • +
+
+
+
+
+

Python Module Index

@@ -123,70 +164,31 @@

Python Module Index

+
- -
-
- -
-
-
- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - -
- - - - - + + + + + \ No newline at end of file diff --git a/docs/_build/html/scripts.html b/docs/_build/html/scripts.html index 87be1ee..3e743be 100644 --- a/docs/_build/html/scripts.html +++ b/docs/_build/html/scripts.html @@ -1,106 +1,148 @@ + + + + + - - - - - - scripts package — GalSim-Euclid-Like 0.0.1 documentation - - - - - - - - - - - + + scripts package — GalSim-Euclid-Like 0.0.1 documentation + + - + + + + + + + + + - - + +
+ + +
+ +
+
+
+ +
+
+
+
+
-

scripts package

+

scripts package

-

Submodules

+

Submodules

-

scripts.download_psf module

+

scripts.download_psf module

A program to download the Euclid-like PSF sampled across the focal plane for discrete wavelengths. The code below was adapted from: https://github.com/GalSim-developers/GalSim/blob/releases/2.5/galsim/download_cosmos.py

-scripts.download_psf.check_existing(target, unpack_dir, meta, args, logger)[source]
+scripts.download_psf.check_existing(target, unpack_dir, meta, args, logger)[source]
-scripts.download_psf.check_remove(do_unpack, target, args)[source]
+scripts.download_psf.check_remove(do_unpack, target, args)[source]
-scripts.download_psf.check_unpack(do_download, unpack_dir, target, args)[source]
+scripts.download_psf.check_unpack(do_download, unpack_dir, target, args)[source]
-scripts.download_psf.download(do_download, url, target, meta, args, logger)[source]
+scripts.download_psf.download(do_download, url, target, meta, args, logger)[source]
-scripts.download_psf.download_psf(args, logger)[source]
+scripts.download_psf.download_psf(args, logger)[source]

The main script given the ArgParsed args and a logger

-scripts.download_psf.get_input()[source]
+scripts.download_psf.get_input()[source]
-scripts.download_psf.get_meta(url, args, logger)[source]
+scripts.download_psf.get_meta(url, args, logger)[source]
-scripts.download_psf.get_names(args, logger)[source]
+scripts.download_psf.get_names(args, logger)[source]
-scripts.download_psf.main(command_args)[source]
+scripts.download_psf.main(command_args)[source]

The whole process given command-line parameters in their native (non-ArgParse) form.

+scripts.download_psf.make_link(do_link, unpack_dir, link_dir, args, logger)[source]
-scripts.download_psf.parse_args(command_args)[source]
+scripts.download_psf.parse_args(command_args)[source]

Handle the command line arguments using either argparse (if available) or optparse.

-scripts.download_psf.query_yes_no(question, default='yes')[source]
+scripts.download_psf.query_yes_no(question, default='yes')[source]

Ask a yes/no question via input() and return their answer.

“question” is a string that is presented to the user. “default” is the presumed answer if the user just hits <Enter>.

@@ -113,104 +155,62 @@

Submodules
-scripts.download_psf.remove_tarball(do_remove, target, logger)[source]
+scripts.download_psf.remove_tarball(do_remove, target, logger)[source]

-scripts.download_psf.run_main()[source]
+scripts.download_psf.run_main()[source]

Kick off the process grabbing the command-line parameters from sys.argv

-scripts.download_psf.unpack(do_unpack, target, target_dir, unpack_dir, meta, args, logger)[source]
+scripts.download_psf.unpack(do_unpack, target, target_dir, unpack_dir, meta, args, logger)[source]
-

scripts.make_euclidlike_pupil_plane module

+

scripts.make_euclidlike_pupil_plane module

This code has been taken from https://github.com/CosmoStat/wf-psf Liaudat et al.

-

This is an implementation of the function generate_pupil_obscurations https://github.com/CosmoStat/wf-psf/blob/87e0c8e9770199cd276f5f0551054cb4902d53bb/src/wf_psf/sims/SimPSFToolkit.py#L233

+

This is an implementation of the function generate_pupil_obscurations https://github.com/CosmoStat/wf-psf/blob/87e0c8e9770199cd276f5f0551054cb4902d53bb/src/wf_psf/sims/SimPSFToolkit.py#L233

NOTE from Tobias Liaudat: “Simple procedure considering only the 2D plane. No 3D projections wrt the angle of the FoV is done.”

-scripts.make_euclidlike_pupil_plane.make_EuclidLike_pupil_plane(N_pix=2048, do_filter=True, N_filter=3)[source]
+scripts.make_euclidlike_pupil_plane.make_EuclidLike_pupil_plane(N_pix=2048, do_filter=True, N_filter=3)[source]
+
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- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - - | - Page source -
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© Copyright 2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang.

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- ©2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang. - - | - Powered by Sphinx 8.1.3 - & Alabaster 1.0.0 - -
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"overview": [7, 15], "packag": 16, "plane": [2, 10], "refer": 15, "relev": 15, "revis": 11, "script": 16, "slurm": 9, "start": 15, "submodul": 16, "tabl": [4, 12], "us": [1, 4, 9, 12], "v0": 11, "version": 11}}) \ No newline at end of file diff --git a/docs/conf.py b/docs/conf.py index 3220f77..826a10f 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -16,7 +16,10 @@ project = 'GalSim-Euclid-Like' copyright = '2024, Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang' author = 'Rachel Mandelbaum, Axel Guinot, Federico Berlfein, Andy Park, Xiangchong Li, Michael Troxel, Tianqing Zhang' -release = '0.0.1' + +# red version and release +version = '.'.join(map(str,euclidlike.__version_info__[:2])) +release = euclidlike.__version__ # -- General configuration --------------------------------------------------- # https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration @@ -31,11 +34,67 @@ # -- Options for HTML output ------------------------------------------------- # https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output -html_theme = 'alabaster' -html_static_path = ['_static'] extensions = [ 'sphinx.ext.autodoc', # Generate documentation from docstrings 'sphinx.ext.viewcode', # Show source code in the documentation 'sphinx.ext.napoleon', # Support for Google-style and NumPy-style docstrings -] \ No newline at end of file + 'sphinx.ext.autosectionlabel', + 'gh-link', +] + + + + + +# -- Options for HTML output ------------------------------------------------- + +html_theme = 'sphinx_rtd_theme' +html_static_path = ['_static'] + +# Custom sidebar templates, must be a dictionary that maps document names +# to template names. +# +# The default sidebars (for documents that don't match any pattern) are +# defined by theme itself. Builtin themes are using these templates by +# default: ``['localtoc.html', 'relations.html', 'sourcelink.html', +# 'searchbox.html']``. +# +# html_sidebars = {} + +# https://michaelgoerz.net/notes/extending-sphinx-napoleon-docstring-sections.html +# -- Extensions to the Napoleon GoogleDocstring class --------------------- + +# The master toctree document. +master_doc = 'index' + +# The name of the Pygments (syntax highlighting) style to use. +pygments_style = 'sphinx' + +# The reST default role (used for this markup: `text`) to use for all +# documents. +default_role = 'any' + +from sphinx.ext.napoleon.docstring import GoogleDocstring + +# first, we define new methods for any new sections and add them to the class +def parse_keys_section(self, section): + return self._format_fields('Keys', self._consume_fields()) +GoogleDocstring._parse_keys_section = parse_keys_section + +def parse_attributes_section(self, section): + return self._format_fields('Attributes', self._consume_fields()) +GoogleDocstring._parse_attributes_section = parse_attributes_section + +def parse_class_attributes_section(self, section): + return self._format_fields('Class Attributes', self._consume_fields()) +GoogleDocstring._parse_class_attributes_section = parse_class_attributes_section + +# we now patch the parse method to guarantee that the the above methods are +# assigned to the _section dict +def patched_parse(self): + self._sections['keys'] = self._parse_keys_section + self._sections['class attributes'] = self._parse_class_attributes_section + self._unpatched_parse() +GoogleDocstring._unpatched_parse = GoogleDocstring._parse +GoogleDocstring._parse = patched_parse \ No newline at end of file diff --git a/docs/examples.rst b/docs/examples.rst index 07f898e..4c3fe96 100644 --- a/docs/examples.rst +++ b/docs/examples.rst @@ -6,9 +6,9 @@ The ``GalSim-Euclid-Like/examples`` directory contains example files for how use End-to-end demo --------------- -`end_to_end_demo.py.py <../examples/end_to_end_demo.py>`_ +:gh-link:`end_to_end_demo.py ` -This first demo is the euclidlike-equivalent of `demo 13 `_ in ``GalSim``. This demo uses the Euclid-like PSF, WCS, and background noise to produce a realistic scene of galaxies and stars as observed from a Euclid-like Telescope. +This first demo is the euclidlike-equivalent of _`demo 13 `_ in ``GalSim``. This demo uses the Euclid-like PSF, WCS, and background noise to produce a realistic scene of galaxies and stars as observed from a Euclid-like Telescope. ** Features introduced in the Python file**: @@ -17,13 +17,12 @@ This first demo is the euclidlike-equivalent of `demo 13 `_ +The output generated from this file can be visualized by running the script :gh-link:`plot_VIS.py `. Focal Plane Layout ------------------ - -`plot_VIS.py <../examples/plot_VIS.py>`_ +:gh-link:`focal_plane_layout.ipynb ` This Jupyter Notebook shows the display of the focal plane used in the euclidlike package, along with the CCD centers and ID convention. diff --git a/docs/gh-link.py b/docs/gh-link.py new file mode 100644 index 0000000..2b433a9 --- /dev/null +++ b/docs/gh-link.py @@ -0,0 +1,24 @@ +# Based on https://github.com/sphinx-doc/sphinx/issues/823 +# Taken from https://github.com/GalSim-developers/GalSim/blob/2bf7969b88d8c2e9913338afb7fb703b386f0c9d/docs/gh-link.py + +#import euclidlike + +# The short X.Y version +#version = '.'.join(map(str,euclidlike.__version_info__[:2])) + +#blob_url = 'https://github.com/GalSim-developers/GalSim-Euclid-Like/blob/releases/' + version + '/' +blob_url = 'https://github.com/GalSim-developers/GalSim-Euclid-Like/blob/main/' + +def gh_link_role(rolename, rawtext, text, lineno, inliner, + options={}, content=()): + from docutils import nodes, utils + name, path = text.split('<') + path = path.split('>')[0] + full_url = blob_url + path + pnode = nodes.reference(internal=False, refuri=full_url) + pnode += nodes.literal(name, name, classes=['file']) + return [pnode], [] + + +def setup(app): + app.add_role('gh-link', gh_link_role) \ No newline at end of file diff --git a/docs/index.rst b/docs/index.rst index 3f160f3..7ba41af 100644 --- a/docs/index.rst +++ b/docs/index.rst @@ -1,7 +1,7 @@ .. GalSim-Euclid-Like documentation master file -GalSim-Euclid-Like: Euclid-like images using GalSim +GalSim-Euclid-Like: Euclid-like images using GalSim. ============================================== .. toctree:: diff --git a/euclidlike/__init__.py b/euclidlike/__init__.py index a6b8b7d..77560d7 100644 --- a/euclidlike/__init__.py +++ b/euclidlike/__init__.py @@ -12,3 +12,6 @@ getPSF, getBrightPSF ) from .backgrounds import getSkyLevel + +from ._version import __version__, __version_info__ +version = __version__ diff --git a/euclidlike/_version.py b/euclidlike/_version.py new file mode 100644 index 0000000..2fe7285 --- /dev/null +++ b/euclidlike/_version.py @@ -0,0 +1,2 @@ +__version__ = '0.0.1' +__version_info__ = tuple(map(lambda x:int(x.split('-')[0]), __version__.split('.')))[:3] \ No newline at end of file