This is the software to analyze the images from the Q-PHAST pipeline. This software is an application to analyze images and obtain phenotypes and AST measurements. To use it you need to:
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Install the pipeline as specified here.
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Run it following these instructions.
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Interpret the output with this information.
If you have trouble using this pipeline you can check the FAQs and/or contact us by opening a new issue. Make sure that you paste the error log in the issue description.