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View for RNAseq-based Differential Expression Analysis Results using Marimo

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Marimo Viewer: Cirro

Visualization of data managed in the Cirro data platform

The simple marimo app contained in this repository includes the code needed to:

  • Load the Cirro client library
  • Authenticate the user's identity
  • Select the Cirro project containing the data of interest
  • Select the specific dataset to load
  • Select a single file from that dataset

This provides a starting place for building any type of visualization app which loads data stored within the user's Cirro account.

Development

Set up your development environment:

uv venv
source .venv/bin/activate
uv pip install -r requirements.txt

Launch the app in editable notebook format:

marimo edit app.py

Launch the app locally via HTML-WASM

rm -rf test_build;
marimo export html-wasm app.py -o test_build --mode run --show-code;
python -m http.server --directory test_build;

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