diff --git a/requirements-dev.lock b/requirements-dev.lock
index 1c0bc95..a5831f5 100644
--- a/requirements-dev.lock
+++ b/requirements-dev.lock
@@ -83,13 +83,13 @@ greenlet==3.1.0 ; (python_full_version < '3.13' and platform_machine == 'AMD64')
     # via sqlalchemy
 hydra-core==1.3.2
     # via hydraclick
-hypothesis==6.112.0
+hypothesis==6.112.1
     # via hydraclick
-idna==3.8
+idna==3.9
     # via requests
 imagesize==1.4.1
     # via sphinx
-importlib-metadata==8.4.0
+importlib-metadata==8.5.0
     # via jupyter-cache
     # via myst-nb
 iniconfig==2.0.0
@@ -159,7 +159,7 @@ parso==0.8.4
     # via jedi
 pexpect==4.9.0 ; sys_platform != 'emscripten' and sys_platform != 'win32'
     # via ipython
-platformdirs==4.3.2
+platformdirs==4.3.3
     # via jupyter-core
 pluggy==1.5.0
     # via pytest
@@ -223,12 +223,13 @@ requests==2.32.3
 rpds-py==0.20.0
     # via jsonschema
     # via referencing
-ruff==0.6.4
+ruff==0.6.5
 ruyaml==0.91.0
 setuptools==74.1.2
     # via hydraclick
     # via ruyaml
     # via sphinx-togglebutton
+    # via sphinxcontrib-bibtex
 six==1.16.0
     # via asttokens
     # via pybtex
@@ -258,7 +259,7 @@ sphinx-rtd-theme==0.5.1
 sphinx-togglebutton==0.3.2
 sphinxcontrib-applehelp==2.0.0
     # via sphinx
-sphinxcontrib-bibtex==2.6.2
+sphinxcontrib-bibtex==2.6.3
 sphinxcontrib-devhelp==2.0.0
     # via sphinx
 sphinxcontrib-htmlhelp==2.1.0
@@ -306,7 +307,7 @@ typing-extensions==4.12.2
     # via sqlalchemy
 uc-micro-py==1.0.3
     # via linkify-it-py
-urllib3==2.2.2
+urllib3==2.2.3
     # via requests
 wcwidth==0.2.13
     # via prompt-toolkit
@@ -314,5 +315,5 @@ wheel==0.44.0
     # via sphinx-togglebutton
 xxhash==3.5.0
     # via flogging
-zipp==3.20.1
+zipp==3.20.2
     # via importlib-metadata
diff --git a/requirements.lock b/requirements.lock
index e532e9f..0d8ca0d 100644
--- a/requirements.lock
+++ b/requirements.lock
@@ -33,7 +33,7 @@ frozendict==2.4.4
     # via hydraclick
 hydra-core==1.3.2
     # via hydraclick
-hypothesis==6.112.0
+hypothesis==6.112.1
     # via hydraclick
 iniconfig==2.0.0
     # via pytest
diff --git a/src/hydraclick/core.py b/src/hydraclick/core.py
index 3b61b54..06d8780 100644
--- a/src/hydraclick/core.py
+++ b/src/hydraclick/core.py
@@ -7,7 +7,7 @@
 import hydra
 from omegaconf import DictConfig, OmegaConf
 from unittest.mock import patch
-import flogging
+
 
 from hydraclick.display_config import display_config
 from hydraclick.options import (
@@ -28,6 +28,13 @@
 
 _logger = logging.getLogger(__name__)
 
+try:
+    import flogging
+
+    FLOGGING_AVAILABLE = True
+except ImportError:
+    FLOGGING_AVAILABLE = False
+
 
 def wrap_kwargs_and_config(
     function: Callable,
@@ -98,7 +105,7 @@ def build_hydra_args(
     if config_dir:
         hydra_args_.extend(("--config-dir", f"{config_dir}"))
     if shell_completion:
-        hydra_args_.append("--shell-completion")
+        hydra_args_.extend(("--shell-completion", f"{shell_completion}"))
     _logger.debug(f"Hydra args after composition: {hydra_args}")
     return (*hydra_args_, *hydra_args)
 
@@ -110,13 +117,43 @@ def get_default_dir() -> str:
     return str(curr_dir / "config") if (curr_dir / "config").exists() else str(curr_dir)
 
 
-def run_hydra(function: Callable, hydra_args: tuple[str, ...]) -> None:
-    """Run a function as a hydra app."""
+def run_hydra(
+    function: Callable,
+    hydra_args: tuple[str, ...],
+    config_path: str | None = None,
+    config_name: str | None = "config",
+    version_base: str | None = None,
+    use_flogging: bool = True,
+    **flogging_kwargs: Any,
+) -> Any:
+    """Run a function as a Hydra app.
+
+    Args:
+        function (Callable): The function to be executed as a Hydra command. This function \
+            should accept a `DictConfig` object as its argument.
+        hydra_args (tuple[str, ...]): The arguments to pass to the Hydra command.
+        config_path (str | None, optional): The path to the configuration directory. If not \
+            specified, the default directory is used, which is the current working \
+            directory/config. Defaults to None.
+        config_name (str | None, optional): The name of the configuration file \
+            (without the `.yaml` or `.yml` extension). Defaults to "config".
+        version_base (str | None, optional): The base version of the configuration. \
+            Defaults to None.
+        use_flogging (bool, optional): Whether to use the `flogging` library for \
+            structured logging. Defaults to True.
+        **flogging_kwargs (Any, optional): Additional keyword arguments to pass to \
+            the `flogging.setup` function.
+
+    Returns:
+        Then return value of the function.
 
-    @hydra.main(config_path=get_default_dir(), config_name="config", version_base=None)
+    """
+
+    @hydra.main(config_path=config_path, config_name=config_name, version_base=version_base)
     @functools.wraps(function)
     def _run_hydra_function(loaded_config: DictConfig):
-        flogging.setup(allow_trailing_dot=True)
+        if use_flogging:
+            flogging.setup(**flogging_kwargs)
         return function(loaded_config)
 
     with patch("sys.argv", [sys.argv[0], *list(hydra_args)]):
@@ -124,13 +161,89 @@ def _run_hydra_function(loaded_config: DictConfig):
 
 
 def command_api(
-    function: Callable[[DictConfig], Any],
-    run_mode="config",
-    preprocess_config=None,
-    print_config=True,
-    resolve=True,
+    function: Callable[[DictConfig | dict[str, Any]], Any],
+    config_path: str | Path | None = None,
+    config_name: str | None = "config",
+    version_base: str | None = None,
+    run_mode: str = "config",
+    preprocess_config: Callable[[DictConfig], DictConfig] | None = None,
+    print_config: bool = True,
+    resolve: bool = True,
+    use_flogging: bool = True,
+    **flogging_kwargs: Any,
 ) -> Callable:
-    """Implement using click the hydra CLI API."""
+    """Integrate Hydra's configuration management capabilities with a Click-based CLI.
+
+    Args:
+        function (Callable[[DictConfig], Any]): The function to be executed as a Hydra command. \
+            This function should accept a `DictConfig` object as its argument.
+        config_path (str | Path | None, optional): The path to the configuration directory. \
+            If not specified, the default directory is used.
+        config_name (str | None, optional): The name of the configuration file \
+            (without the `.yaml` or `.yml` extension). Defaults to `"config"`.
+        version_base (str | None, optional): The base version of the configuration. \
+            Defaults to `None`.
+        run_mode (str, optional): The mode in which to run the function. Can be `"config"` \
+            or `"kwargs"`. Defaults to `"config"`.
+        preprocess_config (Callable[[DictConfig], DictConfig] | None, optional): A function \
+            to preprocess the configuration before passing it to the main function. \
+            Defaults to `None`.
+        print_config (bool, optional): Whether to print the configuration before \
+            running the function. Defaults to `True`.
+        resolve (bool, optional): Whether to resolve the configuration before running the \
+            function. Defaults to `True`.
+        use_flogging (bool, optional): Whether to use the `flogging` library for structured \
+            logging. Defaults to `True`.
+        **flogging_kwargs (Any, optional): Additional keyword arguments to pass to the \
+            `flogging.setup` function.
+
+    Returns:
+        Callable: A Click-compatible command function that can be used as a CLI command.
+
+    Example:
+        ```python
+        from omegaconf import DictConfig
+
+        def my_function(config: DictConfig):
+            print(config.pretty())
+
+        click_command = command_api(
+            function=my_function,
+            config_path="path/to/config",
+            config_name="my_config",
+            version_base="1.0",
+            run_mode="config",
+            preprocess_config=None,
+            print_config=True,
+            resolve=True,
+            use_flogging=True,
+            allow_trailing_dot=True
+        )
+        ```
+
+        In this example, `my_function` is wrapped by `command_api` to create a Click-compatible \
+        command. The configuration is loaded from the specified `config_path` and `config_name`, \
+        and the function is executed with the resolved configuration.
+
+    Notes:
+        - The `command_api` function uses several Hydra and Click decorators to provide \
+            a rich CLI experience.
+        - If `use_flogging` is enabled but the `flogging` library is not available, \
+            a warning is logged, and `flogging` is disabled.
+        - The `preprocess_config` function, if provided, allows for custom preprocessing of the \
+            configuration before it is passed to the main function.
+
+    """
+    config_path = get_default_dir() if config_path is None else str(config_path)
+    if config_name is not None:
+        config_name = str(config_name).replace(".yaml", "").replace(".yml", "")
+    if use_flogging and not FLOGGING_AVAILABLE:
+        _logger.warning(
+            "Flogging is not available. Run `pip install flogging` to use the structured logging."
+        )
+        use_flogging = False
+    if not flogging_kwargs:
+        flogging_kwargs = {"allow_trailing_dot": True}
 
     @hydra_args_argument
     @hydra_help_option
@@ -155,13 +268,22 @@ def click_compatible(
         info: bool,
         run: bool,
         multirun: bool,
-        config_path: str,
-        config_name: str,
+        config_path_: str,
+        config_name_: str,
         config_dir: str,
         shell_completion: bool,
         hydra_args: tuple[str, ...] | None = None,
     ):
-        nonlocal print_config, run_mode, preprocess_config, resolve
+        nonlocal \
+            print_config, \
+            run_mode, \
+            preprocess_config, \
+            resolve, \
+            config_path, \
+            config_name, \
+            version_base, \
+            use_flogging, \
+            flogging_kwargs
         if show_config:
             print_config = False
         true_func = wrap_kwargs_and_config(
@@ -176,32 +298,84 @@ def click_compatible(
             info,
             run,
             multirun,
-            config_path,
-            config_name,
+            config_path_,
+            config_name_,
             config_dir,
             shell_completion,
             hydra_args,
         )
-        return run_hydra(true_func, hydra_args)
+        return run_hydra(
+            true_func,
+            hydra_args=hydra_args,
+            config_path=config_path,
+            config_name=config_name,
+            version_base=version_base,
+            use_flogging=use_flogging,
+            **flogging_kwargs,
+        )
 
     return click_compatible
 
 
 def hydra_command(
-    run_mode: str = "config",  # "config" | "kwargs"
-    print_config: bool = True,
+    config_path: str | Path | None = None,
+    config_name: str | None = "config",
+    version_base: str | None = None,
+    run_mode: str = "config",
     preprocess_config: Callable[[DictConfig], DictConfig] | None = None,
+    print_config: bool = True,
     resolve: bool = True,
-):
-    """Wrap a function so it can run as a hydra command."""
+    use_flogging: bool = True,
+    **flogging_kwargs: Any,
+) -> Callable:
+    """Integrate Hydra's configuration management capabilities with a Click-based CLI.
+
+    Args:
+        config_path (str | Path | None, optional): The path to the configuration directory. \
+            If not specified, the default directory is used.
+        config_name (str | None, optional): The name of the configuration file \
+            (without the `.yaml` or `.yml` extension). Defaults to `"config"`.
+        version_base (str | None, optional): The base version of the configuration. \
+            Defaults to `None`.
+        run_mode (str, optional): The mode in which to run the function. Can be `"config"` \
+            or `"kwargs"`. Defaults to `"config"`.
+        preprocess_config (Callable[[DictConfig], DictConfig] | None, optional): A function to \
+            preprocess the configuration before passing it to the main function. \
+            Defaults to `None`.
+        print_config (bool, optional): Whether to print the configuration before \
+            running the function. Defaults to `True`.
+        resolve (bool, optional): Whether to resolve the configuration before running \
+            the function. Defaults to `True`.
+        use_flogging (bool, optional): Whether to use the `flogging` library for structured \
+            logging. Defaults to `True`.
+        **flogging_kwargs (Any, optional): Additional keyword arguments to pass to the \
+            `flogging.setup` function.
+
+    Returns:
+        Callable: A Click-compatible command function that can be used as a CLI command.
+
+    Notes:
+        - The `command_api` function uses several Hydra and Click decorators to provide \
+            a rich CLI experience.
+        - If `use_flogging` is enabled but the `flogging` library is not available, \
+            a warning is logged, and `flogging` is disabled.
+        - The `preprocess_config` function, if provided, allows for custom preprocessing of the \
+            configuration before it is passed to the main function.
+
+    """
 
     def decorator(function: Callable):
         return command_api(
             function,
+            config_path=config_path,
+            config_name=config_name,
+            version_base=version_base,
+            use_flogging=use_flogging,
             run_mode=run_mode,
             print_config=print_config,
             preprocess_config=preprocess_config,
             resolve=resolve,
+            **flogging_kwargs,
         )
 
     return decorator
diff --git a/src/hydraclick/options.py b/src/hydraclick/options.py
index e46cf73..643408b 100644
--- a/src/hydraclick/options.py
+++ b/src/hydraclick/options.py
@@ -77,7 +77,7 @@
 config_path_option = click.option(
     "--config-path",
     "-cp",
-    "config_path",
+    "config_path_",
     help=(
         "Overrides the config_path specified in hydra.main(). "
         "The config_path is absolute or relative to the Python file declaring @hydra.main()."
@@ -96,7 +96,7 @@
 config_name_option = click.option(
     "--config-name",
     "-cn",
-    "config_name",
+    "config_name_",
     help="Overrides the config_name specified in hydra.main()",
     default=None,
     type=click.STRING,
@@ -126,8 +126,7 @@
     "-sc",
     "shell_completion",
     help="Install or Uninstall shell tab completion",
-    is_flag=True,
-    default=False,
+    default=None,
 )
 # Unused stuff
 parallel_option = click.option(