ProcessingPack

Overview

ProcessingPack is a set of classes and functions to execute HT-MEK image processing (feature finding and quantification).

It is designed around the following paradigm:

• Imaging of a ChipImage is single or series
  • A given ChipImage is a 2-D array of Stamps
  • A Stamp contains feature with attributes. Principle features are:
    • Chamber: the primary reaction chamber
    • Button: the contact area of the button on the slide

Dev Notes:

• Check package requirements: use pipreqs on directory containing runpack
• Local install
• Download the repo and unzip
• Change directory to the download pathcd /repo-download_path
• Pip install in virtual env with pip install -e .
• Register venv with Jupyter: python -m ipykernel install --user --name=processingpack