Predators and nutrient availability favor protozoa-resisting bacteria in aquatic systems

Publication

Coming soon...

create_line_chart.R

Script to visualize the data of the experiment. Mean values with indicated stardard deviations are plotted in a line chart.

Example

create_line_chart.R -i data_to_plot.txt -o line_chart

Dependencies

The following R packages are required to run the script:

• ggplot2
• reshape
• plyr

create_taxa_summary.R

A script that creates a taxa summary form a OTU table in classic format, a mapping file and taxonomy file has to be given to the script as well.

Example

create_taxa_summary.R -i otu_table_classic.txt -m  mapping_file.txt -t taxonomy.txt -o taxa_summary_plot

Dependencies

The following R packages are required to run the script:

• phyloseq
• ggplot2

glmer_commands.txt

Dependencies

The following R packages are required to run the model:

• lme4
• sjPlot