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NMDC environmental context bindings, Protege 5.6.3 (old) #1597

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turbomam
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start with see_alsos

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turbomam commented Jan 15, 2025

I have no idea why this PR added ChEBI and NCBITaxon class declarations

  • Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_15368>))
  • Declaration(Class(<http://purl.obolibrary.org/obo/NCBITaxon_12965>))

or why it moved this synonym declaration by a few lines

AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/ENVO_00002150> "coastal seawater")

All I meant to add was

AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/ENVO_03605013> <https://microbiomedata.github.io/submission-schema/EnvBroadScaleSoilEnum/>)

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turbomam commented Jan 15, 2025

triggered by (for example)

SubClassOf(<http://purl.obolibrary.org/obo/ENVO_03510008> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/BFO_0000051> <http://purl.obolibrary.org/obo/CHEBI_15368>))

[diesel exhaust](http://purl.obolibrary.org/obo/ENVO_03510008)

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Could this be due to me using a different version of Protege from the last main branch editor?

I'm using 5.6.3

Or a more recent build of the ODK Docker image?

@turbomam turbomam requested a review from cmungall January 15, 2025 21:18
@turbomam turbomam closed this Jan 16, 2025
@turbomam turbomam changed the title NMDC environmental context bindings NMDC environmental context bindings, Protege 5.6.3 (old) Jan 16, 2025
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Associate EnvO classes with NMDC environmental context subset properties
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