Avoid global usage

ElixirTeSS · Jan 15, 2025 · 2101473 · 2101473
1 parent 3b72d3f
commit 2101473
Showing 1 changed file with 2 additions and 5 deletions.
diff --git a/lib/tasks/topics.rake b/lib/tasks/topics.rake
@@ -1,8 +1,4 @@
 namespace :tess do
-
-  $api_key = Rails.application.config.secrets.bioportal_api_key
-
-
   desc 'Query BioPortal for scientific topics'
   task get_topics: :environment do
     outfile = File.open('scientific_topics.csv', 'w')
@@ -36,7 +32,8 @@ namespace :tess do
       }
       clean_desc = desc.encode(Encoding.find('ASCII'), encoding_options).gsub(/[\n#]/,'')
 
-      url = "http://data.bioontology.org/annotator?include=prefLabel&text=#{clean_desc}&ontologies=EDAM&longest_only=false&exclude_numbers=false&whole_word_only=true&exclude_synonyms=false&apikey=#{$api_key}"
+      api_key = Rails.application.config.secrets.bioportal_api_key
+      url = "http://data.bioontology.org/annotator?include=prefLabel&text=#{clean_desc}&ontologies=EDAM&longest_only=false&exclude_numbers=false&whole_word_only=true&exclude_synonyms=false&apikey=#{api_key}"
 
       annotations = []