Crosswalk metadata between Project.toml, codemeta.json, zenodo.json a…

…nd LICENSE
EcoJulia · Jul 15, 2024 · 141e7b9 · 141e7b9 · richardreeve · Jul 15, 2024
1 parent 94470d8
commit 141e7b9
Showing 45 changed files with 748 additions and 63 deletions.
diff --git a/.zenodo.json b/.zenodo.json
@@ -1,18 +1,18 @@
 {
-    "title": "Diversity.jl - diversity measurement in Julia",
+    "title": "Diversity.jl",
     "description": "Julia package for measuring diversity",
     "upload_type": "software",
     "creators": [
         {
-            "affiliation": "University of Glasgow",
             "name": "Reeve, Richard",
             "orcid": "0000-0003-2589-8091",
+            "affiliation": "University of Glasgow",
             "ror": "00vtgdb53"
         },
         {
-            "affiliation": "Biomathematics and Statistics Scotland",
             "name": "Harris, Claire",
             "orcid": "0000-0003-0852-2340",
+            "affiliation": "Biomathematics and Statistics Scotland",
             "ror": "03jwrz939"
         }
     ],
@@ -26,13 +26,13 @@
         }
     ],
     "keywords": [
-        "diversity measurement",
-        "diversity",
+        "EcoJulia",
         "biodiversity",
-        "phylogenetic diversity",
-        "partitioning diversity",
+        "diversity",
+        "diversity measurement",
         "ecology",
-        "EcoJulia",
-        "julia"
+        "julia",
+        "partitioning diversity",
+        "phylogenetic diversity"
     ]
 }
diff --git a/LICENSE b/LICENSE
@@ -0,0 +1,9 @@
+Copyright (c) 2014-2024 Richard Reeve, Claire Harris and Isaac Peetom Heida 
+
+Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
diff --git a/LICENSE.md b/LICENSE.md
diff --git a/Project.toml b/Project.toml
@@ -1,7 +1,10 @@
 name = "Diversity"
 uuid = "d3d5718d-52de-57ab-b67a-eca7fd6175a4"
-author = ["Richard Reeve <Richard.Reeve@glasgow.ac.uk>", "Claire Harris", "Isaac Peetom Heida"]
-version = "0.5.13"
+author = ["Richard Reeve <richard.reeve@glasgow.ac.uk>", "Claire Harris", "Isaac Peetom Heida"]
+version = "0.5.14"
+
+[license]
+SPDX = "BSD-2-Clause"
 
 [deps]
 DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
@@ -19,8 +22,8 @@ Phylo = "aea672f4-3940-5932-aa44-993d1c3ff149"
 Requires = "ae029012-a4dd-5104-9daa-d747884805df"
 
 [extensions]
-DiversityPhyloExt = "Phylo"
 DiversityAxisArraysExt = "AxisArrays"
+DiversityPhyloExt = "Phylo"
 
 [compat]
 AxisArrays = "0.4"
@@ -40,6 +43,22 @@ Statistics = "1.8"
 StatsBase = "0.32, 0.33, 0.34"
 julia = "1.8"
 
+[[authors]]
+name = "Richard Reeve"
+orcid = "0000-0003-2589-8091"
+email = "richard.reeve@glasgow.ac.uk"
+
+    [[authors.affiliation]]
+    ror = "00vtgdb53"
+[[authors]]
+name = "Claire Harris"
+orcid = "0000-0003-0852-2340"
+
+    [[authors.affiliation]]
+    ror = "03jwrz939"
+[[authors]]
+name = "Isaac Peetom Heida"
+
 [extras]
 AxisArrays = "39de3d68-74b9-583c-8d2d-e117c070f3a9"
 CSV = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b"

diff --git a/codemeta.json b/codemeta.json
@@ -4,56 +4,59 @@
     "applicationCategory": "ecology",
     "author": [
         {
-            "id": "https://orcid.org/0000-0003-2589-8091",
             "type": "Person",
-            "affiliation": {
-                "type": "Organization",
-                "name": "University of Glasgow",
-                "identifier": "https://ror.org/00vtgdb53"
-            },
-            "email": "richard.reeve@glasgow.ac.uk",
+            "givenName": "Richard",
             "familyName": "Reeve",
-            "givenName": "Richard"
+            "email": "richard.reeve@glasgow.ac.uk",
+            "id": "https://orcid.org/0000-0003-2589-8091",
+            "affiliation": [
+                {
+                    "type": "Organization",
+                    "name": "University of Glasgow",
+                    "identifier": "https://ror.org/00vtgdb53"
+                }
+            ]
         },
         {
-            "id": "https://orcid.org/0000-0003-0852-2340",
             "type": "Person",
-            "affiliation": {
-                "type": "Organization",
-                "name": "Biomathematics and Statistics Scotland",
-                "identifier": "https://ror.org/03jwrz939"
-            },
-            "email": "claire.harris@bioss.ac.uk",
+            "givenName": "Claire",
             "familyName": "Harris",
-            "givenName": "Claire"
+            "id": "https://orcid.org/0000-0003-0852-2340",
+            "affiliation": [
+                {
+                    "type": "Organization",
+                    "name": "Biomathematics and Statistics Scotland",
+                    "identifier": "https://ror.org/03jwrz939"
+                }
+            ]
         }
     ],
     "codeRepository": "https://github.com/EcoJulia/Diversity.jl",
     "dateCreated": "2014-08-31",
-    "dateModified": "2024-07-04",
+    "dateModified": "2024-07-15",
     "datePublished": "2017-04-09",
     "description": "Julia package for measuring diversity",
-    "downloadUrl": "https://github.com/EcoJulia/Diversity.jl/archive/refs/tags/v0.5.13.tar.gz",
+    "downloadUrl": "https://github.com/EcoJulia/Diversity.jl/archive/refs/tags/v0.5.14.tar.gz",
     "identifier": "10.5281/zenodo.597610",
     "keywords": [
-        "diversity measurement",
-        "diversity",
+        "EcoJulia",
         "biodiversity",
-        "phylogenetic diversity",
-        "partitioning diversity",
+        "diversity",
+        "diversity measurement",
         "ecology",
-        "EcoJulia",
-        "julia"
+        "julia",
+        "partitioning diversity",
+        "phylogenetic diversity"
     ],
     "license": "https://spdx.org/licenses/BSD-2-Clause",
     "name": "Diversity.jl",
     "operatingSystem": [
-        "macOS",
         "Linux",
-        "Windows"
+        "Windows",
+        "macOS"
     ],
-    "programmingLanguage": "Julia",
-    "version": "0.5.13",
+    "programmingLanguage": "julia",
+    "version": "v0.5.14",
     "codemeta:contIntegration": {
         "id": "https://github.com/EcoJulia/Diversity.jl/actions/workflows/testing.yaml"
     },

diff --git a/docs/Project.toml b/docs/Project.toml
@@ -0,0 +1,12 @@
+[deps]
+DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
+Dates = "ade2ca70-3891-5945-98fb-dc099432e06a"
+Diversity = "d3d5718d-52de-57ab-b67a-eca7fd6175a4"
+Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
+Git = "d7ba0133-e1db-5d97-8f8c-041e4b3a1eb2"
+HTTP = "cd3eb016-35fb-5094-929b-558a96fad6f3"
+JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
+JuliaFormatter = "98e50ef6-434e-11e9-1051-2b60c6c9e899"
+Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
+TOML = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
+YAML = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6"
diff --git a/docs/make.jl b/docs/make.jl
@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: BSD-2-Clause
+
 using Documenter
 using Diversity
 using Phylo