-
Notifications
You must be signed in to change notification settings - Fork 1
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge pull request #2 from ESMCI/docbranch
update README
- Loading branch information
Showing
1 changed file
with
189 additions
and
2 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,3 +1,190 @@ | ||
| CPRNC is a fortran program used to compare netcdf data files. | ||
| It was developed and has evolved for use with CESM. | ||
| cprnc README | ||
| ------------ | ||
|
|
||
| cprnc is a generic tool for analyzing a netcdf file or comparing | ||
| two netcdf files. | ||
|
|
||
| If you are trying to debug an installed cprnc tool make sure that you | ||
| are looking at the correct one by comparing the path to the one in | ||
| your case directory. | ||
|
|
||
|
|
||
| Quick Start Guide: | ||
| ------------------ | ||
|
|
||
| cprnc uses cmake and requires netcdf-fortran. It is a serial program and must | ||
| use a serial build of the netcdf-fortran library. To build | ||
| cd cprnc | ||
| mkdir bld | ||
| cd bld | ||
| cmake ../ | ||
|
|
||
| This should be suffiecient if netcdf-fortran and the compiler that | ||
| library was built with are in the path. | ||
|
|
||
| Finally, put the resulting executable in CCSM_CPRNC as defined in | ||
| config_machines.xml. | ||
|
|
||
|
|
||
| Usage: cprnc [-v] [-d dimname:start[:count]] file1 [file2] | ||
| -m: Compare each time sample. Default is false, i.e. match "time" | ||
| coordinate values before comparing | ||
| -v: Verbose output | ||
| -d dimname:start[:count] | ||
| Print variable values for the specified dimname index subrange. | ||
|
|
||
|
|
||
| Users Guide: | ||
| ------------ | ||
|
|
||
| cprnc is a Fortran-90 application. It relies on netcdf version 3 or | ||
| later and uses the f90 netcdf interfaces. It requires a netcdf include | ||
| file and a netcdf library. | ||
|
|
||
| cprnc generates an ascii output file via standard out. It initially | ||
| summarizes some characteristics of the input file[s]. A compare file is | ||
| generally 132 characters wide and an analyze file is less than 80 | ||
| characters wide. | ||
|
|
||
| In analyze mode, the output for a field looks like | ||
|
|
||
| ( lon, lat, time, -----) | ||
| 259200 ( 587, 134, 1) ( 269, 59, 1) | ||
| FX1 96369 8.273160400390625E+02 0.000000000000000E+00 | ||
| avg abs field values: 9.052845920820910E+01 | ||
|
|
||
| and a guide to this information is printed at the top of the file | ||
|
|
||
| ( dim1, dim2, dim3, dim4) | ||
| ARRSIZ1 ( indx1, indx2, indx3) file 1 | ||
| FIELD NVALID MAX MIN | ||
|
|
||
|
|
||
| The first 10 characters of the field name are identified in the first | ||
| dozen columns of the third line. | ||
| The first line summarizes the names of the dimensions of the field | ||
| The second line summarizes the indices of the maximum and minimum value | ||
| of the field for the first three dimensions. If the fourth dimension | ||
| exists, it's always assumed to be time. Time is handled separately. | ||
| The third line summarizes the number of valid values in the array | ||
| and the maximum and minimum value over those valid values. Invalid | ||
| values are values that are identified to be "fill" value. | ||
| The last line summarizes some overall statistics including the average | ||
| absolute value of the valid values of the field. | ||
|
|
||
| In comparison mode, the output (132 chars wide) for a field looks like | ||
|
|
||
| 96369 ( lon, lat, time) | ||
| 259200 ( 422, 198, 1) ( 203, 186, 1) ( 47, 169, 1) ( 224, 171, 1) | ||
| FIRA 96369 1.466549530029297E+02 -3.922052764892578E+01 1.4E+02 -3.037954139709473E+01 1.0E+00 -3.979958057403564E+00 | ||
| 96369 1.321966247558594E+02 -1.603044700622559E+01 1.084177169799805E+02 3.982142448425293E+00 | ||
| 259200 ( 156, 31, 1) ( 573, 178, 1) ( | ||
| avg abs field values: 6.778244097051392E+01 rms diff: 1.4E+01 avg rel diff(npos): 4.6E-02 | ||
| 5.960437961084186E+01 avg decimal digits(ndif): 1.2 worst: 0.0 | ||
|
|
||
| and a guide to this information is printed at the top of the file | ||
|
|
||
| NDIFFS ( dim1, dim2, dim3, dim4, ... ) | ||
| ARRSIZ1 ( indx1, indx2, indx3, ... ) file 1 | ||
| FIELD NVALID1 MAX1 MIN1 DIFFMAX VALUES RDIFMAX VALUES | ||
| NVALID2 MAX2 MIN2 | ||
| ARRSIZ2 ( indx1, indx2, indx3, ...) file 2 | ||
|
|
||
| The information content is identical to the information in analyze | ||
| mode with the following additions. Two additional lines are added | ||
| in the main body. Lines 4 and 5 are identical to line 3 and 2 | ||
| respectively but are associated with file 2 instead of file 1. | ||
| In addition, the right hand side of lines 2, 3, and 4 contain | ||
| information about the maximum difference, the location and values | ||
| of the maximum difference, the relative difference and the location | ||
| and values of the maximum relative difference. The last two line | ||
| summarize some overall statistics including average absolute values | ||
| of the field on the two files, rms difference, average relative | ||
| difference, average number of digits that match, and the worst | ||
| case for the number of digits that match. | ||
|
|
||
| "avg rel diff" gives the average relative difference (sum of relative | ||
| differences normalized by the number of indices where both variables | ||
| have valid values). The denominator for each relative difference is | ||
| the MAX of the two values. | ||
|
|
||
| "avg decimal digits" is determined by: For each diff, determine the | ||
| number of digits that match (as -log10(rdiff(i)); add this to a | ||
| running sum; then normalize by the number of diffs (ignoring places | ||
| where the two variables are the same). For example, if there are 10 | ||
| values, 8 of which match, one has a relative difference of 1e-3 and | ||
| one has a relative difference of 1e-5, then the avg decimal digits | ||
| will be 4. | ||
|
|
||
| "worst decimal digits" is simply log10(1/rdmax), where rdmax is the | ||
| max relative difference (in the above example, this would give 3). | ||
|
|
||
| At the end of the output file, a summary is presented that looks like | ||
|
|
||
| SUMMARY of cprnc: | ||
| A total number of 119 fields were compared | ||
| of which 83 had non-zero differences | ||
| and 17 had differences in fill patterns | ||
| and 2 had differences in dimension sizes | ||
| A total number of 10 fields could not be analyzed | ||
| A total number of 0 time-varying fields on file 1 were not found on file 2. | ||
| A total number of 0 time-constant fields on file 1 were not found on file 2. | ||
| A total number of 0 time-varying fields on file 2 were not found on file 1. | ||
| A total number of 0 time-constant fields on file 2 were not found on file 1. | ||
| diff_test: the two files seem to be DIFFERENT | ||
|
|
||
|
|
||
| This summarizes: | ||
| - the number of fields that were compared | ||
| - the number of fields that differed (not counting fields that differed | ||
| only in the fill pattern) | ||
| - the number of fields with differences in fill patterns | ||
| - the number of fields with differences in dimension sizes | ||
| - the number of fields that could not be analyzed | ||
| - the number of fields on one file but not the other | ||
| - for files with an unlimited (time) dimension, these counts are | ||
| broken down into time-varying fields (i.e., fields with an unlimited | ||
| dimension) and time-constant fields (i.e., fields without an | ||
| unlimited dimension) | ||
| - whether the files are IDENTICAL, DIFFERENT, or DIFFER only in their field lists | ||
| - Files are considered DIFFERENT if there are differences in the values, fill | ||
| patterns or dimension sizes of any variable | ||
| - Files are considered to "DIFFER only in their field lists" if matching | ||
| variables are all identical, but there are either fields on file1 that are | ||
| not on file2, or fields on file2 that are not on file1 | ||
| - However, if the only difference in field lists is in the presence | ||
| or absence of time-constant fields on a file that has an unlimited | ||
| (time) dimension, the files are considered to be IDENTICAL, with | ||
| an extra message appended that notes this fact. (While not ideal, | ||
| this exception is needed so that exact restart tests pass despite | ||
| some time-constant fields being on the output files from one case | ||
| but not the other.) | ||
|
|
||
| Developers Guide: | ||
| ----------------- | ||
|
|
||
| The tool works as follows. | ||
|
|
||
| Fields can be analyzed if they are int, float or double and | ||
| have between 0 and n dimensions | ||
|
|
||
| In general, fields that appear on both files are | ||
| compared. If they are sizes, no difference | ||
| statistics are computed and only a summary of the fields on | ||
| the files are presented. If fields only appear | ||
| on one file, those fields are analyzed. | ||
|
|
||
| The unlimited dimension is treated uniquely. In general, for files | ||
| that have a dimension named "time", the time axes are compared | ||
| and matching time values on the two files are compared one | ||
| timestep at a time. Time values that don't match are skipped. | ||
| To override the matching behaviour, use cprnc -m. In this mode, | ||
| timestamps are compared in indexical space. In analyze mode, | ||
| the fields are analyzed one timestamp at a time. In general, | ||
| if there is a "time" axis, it will be the outer-most loop in | ||
| the output analysis. In compare mode, fields with a time axis | ||
| and a timestamp that are not common between the two files are | ||
| ignored. | ||
|
|
||
| It is also possible to compare files that don't have an unlimited | ||
| dimension; in this case, the '-m' flag must be given. |