want externals to match .gitmodules

ESCOMP · Nov 1, 2024 · e4f7ccc · e4f7ccc
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diff --git a/components/cdeps b/components/cdeps
diff --git a/components/cice b/components/cice
diff --git a/components/clm b/components/clm
diff --git a/components/mom b/components/mom
diff --git a/share b/share
+3 −0		cime_config/stream_cdeps.py
+22 −65		datm/atm_comp_nuopc.F90
+4 −2		datm/cime_config/config_component.xml
+3 −0		datm/cime_config/namelist_definition_datm.xml
+284 −7		datm/cime_config/stream_definition_datm.xml
+0 −40		datm/datm_datamode_cfsr_mod.F90
+0 −37		datm/datm_datamode_clmncep_mod.F90
+0 −39		datm/datm_datamode_core2_mod.F90
+2 −40		datm/datm_datamode_cplhist_mod.F90
+2 −39		datm/datm_datamode_era5_mod.F90
+0 −38		datm/datm_datamode_gefs_mod.F90
+0 −38		datm/datm_datamode_jra_mod.F90
+0 −38		datm/datm_datamode_simple_mod.F90
+13 −3		dglc/cime_config/testdefs/testlist_dglc.xml
+7 −12		dglc/dglc_datamode_noevolve_mod.F90
+10 −6		dglc/glc_comp_nuopc.F90
+12 −9		dice/dice_datamode_ssmi_mod.F90
+12 −6		dice/ice_comp_nuopc.F90
+18 −9		dlnd/lnd_comp_nuopc.F90
+0 −38		docn/docn_datamode_copyall_mod.F90
+0 −38		docn/docn_datamode_cplhist_mod.F90
+0 −44		docn/docn_datamode_iaf_mod.F90
+0 −42		docn/docn_datamode_multilev_dom_mod.F90
+0 −42		docn/docn_datamode_multilev_mod.F90
+10 −9		docn/docn_datamode_som_mod.F90
+33 −33		docn/ocn_comp_nuopc.F90
+4 −2		drof/cime_config/config_component.xml
+2 −1		drof/cime_config/namelist_definition_drof.xml
+32 −0		drof/cime_config/stream_definition_drof.xml
+16 −8		drof/rof_comp_nuopc.F90
+13 −18		dshr/dshr_mod.F90
+16 −7		dwav/wav_comp_nuopc.F90
+160 −2		share/nuopc_shr_methods.F90
+1 −1		.gitmodules
+1 −1		cime_config/buildlib
+21 −3		cime_config/buildnml
+3 −3		cime_config/config_compsets.xml
+36 −0		cime_config/config_pes.xml
+239 −34		cime_config/namelist_definition_cice.xml
+16 −21		cime_config/testdefs/testlist_cice.xml
+1 −1		src
+1 −0		.git-blame-ignore-revs
+1 −1		.gitmodules
+10 −0		bld/CLMBuildNamelist.pm
+83 −205		bld/namelist_files/namelist_defaults_ctsm.xml
+5 −0		bld/namelist_files/namelist_definition_ctsm.xml
+28 −1		bld/unit_testers/build-namelist_test.pl
+5 −1		cime_config/config_component.xml
+8 −0		cime_config/config_compsets.xml
+76 −7		cime_config/testdefs/ExpectedTestFails.xml
+11 −10		cime_config/testdefs/testlist_clm.xml
+8 −0		cime_config/testdefs/testmods_dirs/clm/FatesColdHydro/shell_commands
+1 −0		cime_config/testdefs/testmods_dirs/clm/FatesColdHydro/user_nl_clm
+1 −1		cime_config/testdefs/testmods_dirs/clm/FatesColdLandUse/shell_commands
+17 −2		cime_config/testdefs/testmods_dirs/clm/Hillslope/shell_commands
+0 −2		cime_config/testdefs/testmods_dirs/clm/Hillslope/user_nl_clm
+471 −0		doc/ChangeLog
+7 −0		doc/ChangeSum
+0 −98		doc/source/how-to-make-mesh.md
+34 −61		doc/source/lilac/specific-atm-models/wrf-nesting.rst
+6 −0		doc/source/lilac/specific-atm-models/wrf-tools.rst
+3 −3		...e/users_guide/adding-new-resolutions/Adding-New-Resolutions-or-New-Files-to-the-build-namelist-Database.rst
+1 −1		doc/source/users_guide/adding-new-resolutions/Adding-Resolution-Names.rst
+9 −9		doc/source/users_guide/adding-new-resolutions/Adding-or-Changing-Default-Filenames.rst
+1 −1		doc/source/users_guide/index.rst
+0 −3		doc/source/users_guide/overview/getting-help.rst
+2 −4		doc/source/users_guide/overview/introduction.rst
+1 −1		doc/source/users_guide/overview/quickstart.rst
+0 −88		doc/source/users_guide/running-PTCLM/adding-ptclm-site-data.rst
+0 −135		doc/source/users_guide/running-PTCLM/introduction-to-ptclm.rst
+0 −33		doc/source/users_guide/running-PTCLM/ptclm-examples.rst
+0 −114		doc/source/users_guide/running-PTCLM/using-ptclm.rst
+2 −2		doc/source/users_guide/running-single-points/running-pts_mode-configurations.rst
+20 −7		doc/source/users_guide/running-single-points/running-single-point-configurations.rst
+3 −10		doc/source/users_guide/running-single-points/single-point-and-regional-grid-configurations.rst
+0 −39		...e/users_guide/running-special-cases/Running-stand-alone-CLM-with-transient-historical-CO2-concentration.rst
+2 −2		doc/source/users_guide/running-special-cases/Running-the-prognostic-crop-model.rst
+1 −1		...rce/users_guide/running-special-cases/Running-with-MOAR-data-as-atmospheric-forcing-to-spinup-the-model.rst
+5 −2		doc/source/users_guide/running-special-cases/Running-with-irrigation.rst
+2 −2		...ning-special-cases/Running-with-your-own-previous-simulation-as-atmospheric-forcing-to-spinup-the-model.rst
+7 −7		doc/source/users_guide/running-special-cases/Spinning-up-the-biogeochemistry-BGC-spinup.rst
+0 −1		doc/source/users_guide/running-special-cases/index.rst
+66 −61		doc/source/users_guide/setting-up-and-running-a-case/customizing-the-clm-configuration.rst
+11 −11		doc/source/users_guide/setting-up-and-running-a-case/customizing-the-clm-namelist.rst
+5 −13		doc/source/users_guide/testing/testing.rst
+27 −17		doc/source/users_guide/trouble-shooting/trouble-shooting.rst
+7 −2		doc/source/users_guide/using-clm-tools/building-the-clm-tools.rst
+1 −1		doc/source/users_guide/using-clm-tools/cprnc.rst
+7 −4		doc/source/users_guide/using-clm-tools/creating-domain-files.rst
+4 −1		doc/source/users_guide/using-clm-tools/creating-input-for-surface-dataset-generation.rst
+11 −8		doc/source/users_guide/using-clm-tools/creating-surface-datasets.rst
+5 −2		doc/source/users_guide/using-clm-tools/observational-sites-datasets.rst
+16 −6		doc/source/users_guide/using-clm-tools/what-are-the-clm-tools.rst
+67 −0		doc/source/users_guide/using-mesh-maker/how-to-make-mesh.rst
+3 −6		doc/source/users_guide/using-mesh-maker/index.rst
+3 −0		doc/source/users_guide/using-mesh-maker/test_c240918_global.png
+3 −0		doc/source/users_guide/using-mesh-maker/test_c240918_regional.png
+23 −3		python/ctsm/mesh_plotter.py
+11 −8		python/ctsm/site_and_regional/mesh_plot_type.py
+47 −5		python/ctsm/test/test_advanced_sys_mesh_plotter.py
+9 −12		src/biogeochem/DustEmisLeung2023.F90
+1 −1		src/biogeophys/EnergyFluxType.F90
+26 −26		src/biogeophys/HillslopeHydrologyMod.F90
+12 −2		src/biogeophys/SoilStateInitTimeConstMod.F90
+3 −3		src/biogeophys/SoilTemperatureMod.F90
+18 −19		src/cpl/nuopc/lnd_comp_nuopc.F90
+1 −1		src/fates
+4 −4		src/main/clm_initializeMod.F90
+2 −2		src/main/clm_instMod.F90
+1 −0		src/main/clm_varctl.F90
+7 −1		src/main/controlMod.F90
+3 −0		src/main/histFileMod.F90
+2 −0		src/main/restFileMod.F90
+100 −70		src/main/surfrdMod.F90
+0 −3		tools/mksurfdata_esmf/src/mkglcmecMod.F90