RuntimeError: ConvTranspose 3D is not supported on MPS

[ilikechopin]

Hi

I am quite new and in a basic level with everything here.
I downloaded moose and started the analysis of FDG PET/CT
but, I got the error message like this.

"RuntimeError: ConvTranspose 3D is not supported on MPS"

I am currently using MacBook - M3!
Any suggesting to solve this error?

Thanks!

[LalithShiyam]

Hi @ilikechopin

Please go through the read me for Mac installation. And please follow it to the last word. You need to install a specific branch of torch as mentioned in the readme

https://github.com/ENHANCE-PET/MOOSE?tab=readme-ov-file#for-macs-powered-by-apple-silicon-m-series-chips-with-mps-

[ilikechopin]

Thanks. I don't know what the problem was (as I followed the instruction on the website)
But anyway, now it works!
Merry Christmas!

[ilikechopin]

I have one more question. Would that be possible to select ROI instead of model?
for example,

model: clin_ct_body
There are 4 ROIs

• 1:Legs, 2:Body, 3:Head, 4:Arms

If I need only "3:Head", can I run Moose for specific ROI segmentation of Head? instead of "clin_ct_body" (which would be faster)?

[LalithShiyam]

Hi @ilikechopin

Great that it works. Unfortunately you can't choose individual rois, but you can do some easy post processing to extract the head. ChatGPT can whip you up a quick code.

Lalith

[ilikechopin]

Thanks!

Arto

[LalithShiyam]

Hi there, No worries at all. Go to the path where you created the moose-env environment. Assuming you have created the environment in the Documents folder. Go there via the terminal  by typing: e.g cd ~Documents/Then you should “source” the moose-env to activate it. Think of this as a zoo “environment” where the moose lives. You need to enter the zoo, by typing the command: source moose-env/bin/activate. Once you do that you are inside the environment, and you can use moose as usual. Whenever you close the terminal, you need to do this again.Hope this helps. Cheers and Merry Christmas,Lalith  On Dec 24, 2024, at 9:10 AM, nutellaBear ***@***.***> wrote: Hi @ilikechopin Great that it works. Unfortunately you can't choose individual rois, but you can do some easy post processing to extract the head. ChatGPT can whip you up a quick code. Lalith —Reply to this email directly, view it on GitHub, or unsubscribe.You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>