ENCORE. Enhancing Computational Reproducibility
VERSION 4.1.x
ENCORE is an initiative of the Bioinformatics Laboratory (www.bioinformaticslaboratory.eu) and can be cited as
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van Kampen, A., Mahamune, U., Jongejan, A., van Schaik, B., Balashova, D., Lashgari, D., Pras-Raves, M., Wever, E., Dane, A., Valiente, R.G., and Moerland, P (2024). ENCORE. A Practical Implementation to Improve Reproducibility and Transparency of Computational Research. MetaArXiv. February 19. doi:10.31222/osf.io/m9yqz. Supplementary materials: osf.io/j9hmw/
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van Kampen, A., Mahamune, U., Jongejan, A., van Schaik, B., Balashova, D., Lashgari, D., Pras-Raves, M., Wever, E., Dane, A., Valiente, R.G., and Moerland, P (2024). ENCORE. A Practical Implementation to Improve Reproducibility and Transparency of Computational Research. Nature Communications, 15, 8117. https://doi.org/10.1038/s41467-024-52446-8) [pdf+supplement]
The FSS Navigator is part of ENCORE and can be referred to as:
- Van Kampen AHC, Mahamune U, Jongejan, A (2023) The standardized file system structure (FSS) navigator. Zenodo. DOI: https://doi.org/10.5281/zenodo.7985655
GitHub
GitHub repository containing the ENCORE sFSS template:
- https://github.com/EDS-Bioinformatics-Laboratory/ENCORE
- The ENCORE template can be cited as:
- van Kampen, A. H. C., Mahamune, U., Jongejan, A., van Schaik, B. D. C., Balashova, D., Lashgari, D., Pras-Raves, M., Wever, E. J. M., Dane, A. D., Garcia-Valiente, R., & Moerland, P. D. (2024). ENCORE: A practical implementation to improve reproducibility and transparency of computational research. ENCORE. https://zenodo.org/records/12938252.
ENCORE is an initiative of the Bioinformatics Laboratory (www.bioinformaticslaboratory.eu) with contributions from all group members:
- Prof. dr. Antoine van Kampen
- Dr. Perry Moerland
- Dr. Aldo Jongejan
- Dr. Adrie Dane
- Dr. Mia Pras-Raves (current address UMC Utrecht)
- Barbera van Schaik
- Eric Wever
- Dasha Balashova
- Rodrigo Garcia Valiente
- Danial Lashgari
- Utkarsh Mahamune