Merge remote-tracking branch 'origin/develop' into write_netcdf_cube

.github/pull_request_template.md

@@ -146,10 +146,11 @@ Please delete what is not needed.
   - [ ] Orion
   - [ ] Hercules
   - [ ] Jet
-  - [ ] Gaea
+  - [ ] GaeaC5
+  - [ ] GaeaC6
   - [ ] Derecho
 - WCOSS2
   - [ ] Dogwood/Cactus
   - [ ] Acorn
 - [ ] CI
-- [ ] opnReqTest (complete task if unnecessary)
+- [ ] opnReqTest (complete task if unnecessary)

tests/bl_date.conf

@@ -1 +1 @@
-export BL_DATE=20241212
+export BL_DATE=20241230

tests/fv3_conf/fv3_slurm.IN_hercules

@@ -41,6 +41,8 @@ if [[ @[RT_COMPILER] == intel ]]; then
 elif [[ @[RT_COMPILER] == gnu ]]; then
   # For mvapich2
   export MV2_SHMEM_COLL_NUM_COMM=128
+  export MV2_HOMOGENEOUS_CLUSTER=1
+  export MV2_USE_ALIGNED_ALLOC=1
 fi
 
 # Avoid job errors because of filesystem synchronization delays

tests/logs/OpnReqTests_cpld_control_nowave_noaero_p8_hera.log

@@ -1,9 +1,9 @@
-Mon Oct 21 18:13:22 UTC 2024
+Tue Jan  7 03:15:28 UTC 2025
 Start Operation Requirement Test
 
 
 baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_dbg_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_311611/dbg_base_dbg_base
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_278179/dbg_base_dbg_base
 Checking test dbg_base results ....
 Moving baseline dbg_base files ....
  Moving sfcf021.tile1.nc .........OK
@@ -66,14 +66,14 @@ Moving baseline dbg_base files ....
  Moving RESTART/iced.2021-03-23-21600.nc .........OK
  Moving RESTART/ufs.cpld.cpl.r.2021-03-23-21600.nc .........OK
 
-  0: The total amount of wall time                        = 2424.448685
-  0: The maximum resident set size (KB)                   = 1511852
+  0: The total amount of wall time                        = 4369.524954
+  0: The maximum resident set size (KB)                   = 1493280
 
 Test dbg_base PASS
 
 
 baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_std_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_311611/rst_rst
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_278179/rst_rst
 Checking test rst results ....
  Comparing sfcf021.tile1.nc .....USING NCCMP......OK
  Comparing sfcf021.tile2.nc .....USING NCCMP......OK
@@ -135,14 +135,14 @@ Checking test rst results ....
  Comparing RESTART/iced.2021-03-23-21600.nc .....USING NCCMP......OK
  Comparing RESTART/ufs.cpld.cpl.r.2021-03-23-21600.nc .....USING NCCMP......OK
 
-  0: The total amount of wall time                        = 798.111971
-  0: The maximum resident set size (KB)                   = 1504600
+  0: The total amount of wall time                        = 1284.724733
+  0: The maximum resident set size (KB)                   = 1482880
 
 Test rst PASS
 
 
 baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/cpld_control_c96_noaero_p8_std_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_311611/std_base_std_base
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_278179/std_base_std_base
 Checking test std_base results ....
 Moving baseline std_base files ....
  Moving sfcf021.tile1.nc .........OK
@@ -205,11 +205,11 @@ Moving baseline std_base files ....
  Moving RESTART/iced.2021-03-23-21600.nc .........OK
  Moving RESTART/ufs.cpld.cpl.r.2021-03-23-21600.nc .........OK
 
-  0: The total amount of wall time                        = 784.776830
-  0: The maximum resident set size (KB)                   = 1507688
+  0: The total amount of wall time                        = 1139.037288
+  0: The maximum resident set size (KB)                   = 1488884
 
 Test std_base PASS
 
 OPERATION REQUIREMENT TEST WAS SUCCESSFUL
-Mon Oct 21 19:48:58 UTC 2024
-Elapsed time: 01h:35m:37s. Have a nice day!
+Tue Jan  7 05:37:25 UTC 2025
+Elapsed time: 02h:21m:57s. Have a nice day!

tests/logs/OpnReqTests_regional_control_hera.log

@@ -1,9 +1,9 @@
-Mon Oct 21 15:35:17 UTC 2024
+Mon Jan  6 12:24:27 UTC 2025
 Start Operation Requirement Test
 
 
 baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/regional_control_bit_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_3613607/bit_base_bit_base
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_3494311/bit_base_bit_base
 Checking test bit_base results ....
 Moving baseline bit_base files ....
  Moving dynf000.nc .........OK
@@ -15,14 +15,14 @@ Moving baseline bit_base files ....
  Moving NATLEV.GrbF00 .........OK
  Moving NATLEV.GrbF06 .........OK
 
-  0: The total amount of wall time                        = 1387.422370
-  0: The maximum resident set size (KB)                   = 763032
+  0: The total amount of wall time                        = 1407.193487
+  0: The maximum resident set size (KB)                   = 780976
 
 Test bit_base PASS
 
 
 baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/regional_control_std_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_3613607/dcp_dcp
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_3494311/dcp_dcp
 Checking test dcp results ....
  Comparing dynf000.nc .....USING NCCMP......OK
  Comparing dynf006.nc .....USING NCCMP......OK
@@ -33,14 +33,14 @@ Checking test dcp results ....
  Comparing NATLEV.GrbF00 .....USING CMP......OK
  Comparing NATLEV.GrbF06 .....USING CMP......OK
 
-  0: The total amount of wall time                        = 2284.264268
-  0: The maximum resident set size (KB)                   = 710292
+  0: The total amount of wall time                        = 2195.740053
+  0: The maximum resident set size (KB)                   = 725748
 
 Test dcp PASS
 
 
 baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/regional_control_std_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_3613607/std_base_std_base
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_3494311/std_base_std_base
 Checking test std_base results ....
 Moving baseline std_base files ....
  Moving dynf000.nc .........OK
@@ -52,14 +52,14 @@ Moving baseline std_base files ....
  Moving NATLEV.GrbF00 .........OK
  Moving NATLEV.GrbF06 .........OK
 
-  0: The total amount of wall time                        = 2289.920746
-  0: The maximum resident set size (KB)                   = 719844
+  0: The total amount of wall time                        = 2291.331176
+  0: The maximum resident set size (KB)                   = 734184
 
 Test std_base PASS
 
 
 baseline dir = /scratch1/NCEPDEV/stmp4/role.epic/FV3_OPNREQ_TEST/OPNREQ_TEST/regional_control_std_base_gnu
-working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_3613607/thr_thr
+working dir  = /scratch1/NCEPDEV/stmp2/role.epic/FV3_OPNREQ_TEST/opnReqTest_3494311/thr_thr
 Checking test thr results ....
  Comparing dynf000.nc .....USING NCCMP......OK
  Comparing dynf006.nc .....USING NCCMP......OK
@@ -70,11 +70,11 @@ Checking test thr results ....
  Comparing NATLEV.GrbF00 .....USING CMP......OK
  Comparing NATLEV.GrbF06 .....USING CMP......OK
 
-  0: The total amount of wall time                        = 2287.377209
-  0: The maximum resident set size (KB)                   = 709840
+  0: The total amount of wall time                        = 2194.246673
+  0: The maximum resident set size (KB)                   = 723192
 
 Test thr PASS
 
 OPERATION REQUIREMENT TEST WAS SUCCESSFUL
-Mon Oct 21 18:13:21 UTC 2024
-Elapsed time: 02h:38m:05s. Have a nice day!
+Mon Jan  6 14:57:59 UTC 2025
+Elapsed time: 02h:33m:33s. Have a nice day!