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Update the installation and ease-of-usage for PhageScanner #21

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Update the installation and ease-of-usage for PhageScanner

Update the installation and ease-of-usage for PhageScanner #21

Workflow file for this run

.github/workflows/testing_workflows.yml at 2ec7197
name: phagescanner-cdci-actions
on:
pull_request:
branches:
- master
jobs:
mac-testing:
runs-on: macos-latest
steps:
- uses: actions/checkout@v2
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: '3.x' # Specify the Python version you need
- name: Cache Python dependencies
uses: actions/cache@v3
with:
path: ~/Library/Caches/pip
key: ${{ runner.os }}-pip-${{ hashFiles('requirements.txt') }}
restore-keys: |
${{ runner.os }}-pip-
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install -r requirements.txt
- name: run unit tests for DNA module
run: python3 -m unittest PhageScanner.tests.test_DNA
- name: Test with tox
run: tox
ubuntu-testing:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: '3.12'
- name: Cache Python dependencies
uses: actions/cache@v3
with:
path: ~/.cache/pip
key: ${{ runner.os }}-pip-${{ hashFiles('requirements.txt') }}
restore-keys: |
${{ runner.os }}-pip-
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install -r requirements.txt
- name: run unit tests for DNA module
run: python3 -m unittest PhageScanner.tests.test_DNA
- name: Test with tox
run: tox