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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
S3method("$",Annot)
S3method("$",GSVA)
S3method("[",Annot)
S3method("[",GSVA)
S3method(as.data.frame,Annot)
S3method(as.data.frame,GSVA)
S3method(dim,Annot)
S3method(dim,GSVA)
S3method(head,Annot)
S3method(head,GSVA)
S3method(names,Annot)
S3method(names,GSVA)
S3method(subset,GSVA)
S3method(tail,Annot)
S3method(tail,GSVA)
export(Heatmap)
export(buildAnnot)
export(buildMSIGDB)
export(distcolor)
export(dotPlot)
export(featurePlot)
export(findPathway)
export(genes)
export(idconvert)
export(lightcolor)
export(msigdbinfo)
export(ridgePlot)
export(scgsva)
export(showData)
export(sigPathway)
export(vlnPlot)
exportClasses(Annot)
exportMethods(colnames)
exportMethods(genes)
exportMethods(rownames)
importFrom(AnnotationDbi,as.list)
importFrom(AnnotationDbi,keys)
importFrom(AnnotationDbi,mapIds)
importFrom(BiocParallel,SerialParam)
importFrom(GSVA,gsva)
importFrom(KEGGREST,keggLink)
importFrom(KEGGREST,keggList)
importFrom(Matrix,colSums)
importFrom(Matrix,summary)
importFrom(Seurat,Embeddings)
importFrom(Seurat,as.Seurat)
importFrom(SingleCellExperiment,counts)
importFrom(SingleCellExperiment,logcounts)
importFrom(SummarizedExperiment,assays)
importFrom(dplyr,distinct_)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(dplyr,summarize)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,layer)
importFrom(ggplot2,scale_color_gradient)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggrepel,geom_text_repel)
importFrom(ggridges,geom_density_ridges)
importFrom(ggridges,geom_density_ridges2)
importFrom(ggridges,position_points_jitter)
importFrom(grid,grobName)
importFrom(grid,grobTree)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,topTable)
importFrom(magrittr,"%>%")
importFrom(msigdbr,msigdbr)
importFrom(pheatmap,pheatmap)
importFrom(rlang,sym)
importFrom(rstatix,anova_test)
importFrom(rstatix,t_test)
importFrom(rstatix,wilcox_test)
importFrom(scales,zero_range)
importFrom(tidyr,gather)
importFrom(utils,head)
importFrom(utils,tail)
importFrom(viridis,scale_color_viridis)
importFrom(viridis,viridis)